ADIOS: Use adios easyblock to get the numpy interface built and installed. And add more py3 patches. (WIP)

[akesandgren]

(created using eb --new-pr)

Requires easybuilders/easybuild-easyblocks#2070

[boegelbot]

Travis test report: 2/2 runs failed - see https://travis-ci.org/easybuilders/easybuild-easyconfigs/builds/692585895

Only showing partial log for 1st failed test suite run 22532.1;
full log at https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/692585896

...
ERROR: test__parse_easyconfig_ADIOS-1.13.1-foss-2019a-Python-2.7.15.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for parsing of easyconfig ADIOS-1.13.1-foss-2019a-Python-2.7.15.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "<string>", line 1, in innertest
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 796, in template_easyconfig_test
    ecs = process_easyconfig(spec)
  File "/home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/easybuild/framework/easyconfig/easyconfig.py", line 1940, in process_easyconfig
    raise EasyBuildError("Failed to process easyconfig %s: %s", spec, err.msg)
EasyBuildError: "Failed to process easyconfig /home/travis/build/easybuilders/easybuild-easyconfigs/easybuild/easyconfigs/a/ADIOS/ADIOS-1.13.1-foss-2019a-Python-2.7.15.eb: No software-specific easyblock 'EB_ADIOS' found for ADIOS"

======================================================================
FAIL: test_changed_files_pull_request (test.easyconfigs.easyconfigs.EasyConfigTest)
Specific checks only done for the (easyconfig) files that were changed in a pull request.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 764, in test_changed_files_pull_request
    self.assertTrue(False, error_msg)
AssertionError: Failed to find parsed easyconfig for ADIOS-1.13.1-foss-2019a-Python-2.7.15.eb (and could not isolate it in easyconfigs archive either)

----------------------------------------------------------------------
Ran 9944 tests in 592.475s

FAILED (failures=1, errors=1)
ERROR: Not all tests were successful.
travis_time:end:05e4abe7:start=1590762272812849248,finish=1590762867252459681,duration=594439610433,event=script
�[0K�[31;1mThe command "python -O -m test.easyconfigs.suite" exited with 2.�[0m
travis_time:start:0c664ed4
�[0K$ unset PYTHONPATH
travis_time:end:0c664ed4:start=1590762867256349079,finish=1590762867258595353,duration=2246274,event=script
�[0K�[32;1mThe command "unset PYTHONPATH" exited with 0.�[0m
travis_time:start:005078be
�[0K$ cd $HOME; pip install $TRAVIS_BUILD_DIR
�[33mDEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.�[0m
Processing ./build/easybuilders/easybuild-easyconfigs
Building wheels for collected packages: easybuild-easyconfigs
  Building wheel for easybuild-easyconfigs (setup.py) ... �[?25l-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �-� �\� �|� �/� �done
�[?25h  Stored in directory: /home/travis/.cache/pip/wheels/60/83/5a/68a83b743a3b5a96bdb88de299d7630c9f272b0dec140d3e5d
Successfully built easybuild-easyconfigs
Installing collected packages: easybuild-easyconfigs
Successfully installed easybuild-easyconfigs-4.2.2.dev0
travis_time:end:005078be:start=1590762867261780607,finish=1590762877914470671,duration=10652690064,event=script
�[0K�[32;1mThe command "cd $HOME; pip install $TRAVIS_BUILD_DIR" exited with 0.�[0m
travis_time:start:256bc290
�[0K$ export EB_PYTHON=python
travis_time:end:256bc290:start=1590762877918286265,finish=1590762877920566342,duration=2280077,event=script
�[0K�[32;1mThe command "export EB_PYTHON=python" exited with 0.�[0m
travis_time:start:28bc50b2
�[0K$ eb --show-config | tee eb_show_config.out
#
# Current EasyBuild configuration
# (C: command line argument, D: default value, E: environment variable, F: configuration file)
#
buildpath      (D) = /home/travis/.local/easybuild/build
containerpath  (D) = /home/travis/.local/easybuild/containers
installpath    (D) = /home/travis/.local/easybuild
repositorypath (D) = /home/travis/.local/easybuild/ebfiles_repo
robot-paths    (D) = /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs
sourcepath     (D) = /home/travis/.local/easybuild/sources
travis_time:end:28bc50b2:start=1590762877923849934,finish=1590762878309638302,duration=385788368,event=script
�[0K�[32;1mThe command "eb --show-config | tee eb_show_config.out" exited with 0.�[0m
travis_time:start:12217fd1
�[0K$ grep "^robot-paths .*/easybuild/easyconfigs" eb_show_config.out
robot-paths    (D) = /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs
travis_time:end:12217fd1:start=1590762878313669393,finish=1590762878317289481,duration=3620088,event=script
�[0K�[32;1mThe command "grep "^robot-paths .*/easybuild/easyconfigs" eb_show_config.out" exited with 0.�[0m
travis_time:start:25a18560
�[0K$ eb --search 'TensorFlow-1.14.*.eb' | tee eb_search_TF.out
 * /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/t/TensorFlow/TensorFlow-1.14.0-foss-2019a-Python-3.7.2.eb
 * /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/t/TensorFlow/TensorFlow-1.14.0-fosscuda-2019a-Python-3.7.2.eb
travis_time:end:25a18560:start=1590762878320616852,finish=1590762878936004729,duration=615387877,event=script
�[0K�[32;1mThe command "eb --search 'TensorFlow-1.14.*.eb' | tee eb_search_TF.out" exited with 0.�[0m
travis_time:start:080107f4
�[0K$ grep '/TensorFlow-1.14.0-foss-2019a-Python-3.7.2.eb$' eb_search_TF.out
 * /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/t/TensorFlow/TensorFlow-1.14.0-foss-2019a-Python-3.7.2.eb
travis_time:end:080107f4:start=1590762878940122825,finish=1590762878943914128,duration=3791303,event=script
�[0K�[32;1mThe command "grep '/TensorFlow-1.14.0-foss-2019a-Python-3.7.2.eb$' eb_search_TF.out" exited with 0.�[0m
travis_time:start:1cef2b6e
�[0K$ eb --search '^foss-2018b.eb' | tee eb_search_foss.out
 * /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/f/foss/foss-2018b.eb
travis_time:end:1cef2b6e:start=1590762878947229140,finish=1590762879498901801,duration=551672661,event=script
�[0K�[32;1mThe command "eb --search '^foss-2018b.eb' | tee eb_search_foss.out" exited with 0.�[0m
travis_time:start:02f36e87
�[0K$ grep '/foss-2018b.eb$' eb_search_foss.out
 * /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/f/foss/foss-2018b.eb
travis_time:end:02f36e87:start=1590762879503028737,finish=1590762879506619803,duration=3591066,event=script
�[0K�[32;1mThe command "grep '/foss-2018b.eb$' eb_search_foss.out" exited with 0.�[0m
travis_time:start:24836868
�[0K$ eb --prefix /tmp/$USER M4-1.4.18.eb
== temporary log file in case of crash /tmp/eb-XhkWKT/easybuild-xxZUg2.log
== processing EasyBuild easyconfig /home/travis/virtualenv/python2.7.15/easybuild/easyconfigs/m/M4/M4-1.4.18.eb
== building and installing M4/1.4.18...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 22 sec)
== Results of the build can be found in the log file(s) /tmp/travis/software/M4/1.4.18/easybuild/easybuild-M4-1.4.18-20200529.143502.log
== Build succeeded for 1 out of 1
== Temporary log file(s) /tmp/eb-XhkWKT/easybuild-xxZUg2.log* have been removed.
== Temporary directory /tmp/eb-XhkWKT has been removed.
travis_time:end:24836868:start=1590762879509917714,finish=1590762902588730793,duration=23078813079,event=script
�[0K�[32;1mThe command "eb --prefix /tmp/$USER M4-1.4.18.eb" exited with 0.�[0m


Done. Your build exited with 1.

• 22532.2 - failed => https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/692585897

*bleep, bloop, I'm just a bot (boegelbot v20180813.01)*Please talk to my owner @boegel if you notice you me acting stupid),or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[akesandgren]

This is a bit outdated now, but the usage of the adios easyblock is still valid to get the numpy interface correct.