-
Notifications
You must be signed in to change notification settings - Fork 706
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #12282 from boegel/20210225164142_new_pr_MDTraj195
{chem}[foss/2020b,intel/2020b] MDTraj v1.9.5 w/ Python 3.8.6
- Loading branch information
Showing
2 changed files
with
90 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,45 @@ | ||
# Updated: Pavel Grochal (INUITS) | ||
|
||
easyblock = 'PythonBundle' | ||
|
||
name = 'MDTraj' | ||
version = '1.9.5' | ||
|
||
homepage = 'https://mdtraj.org' | ||
description = "Read, write and analyze MD trajectories with only a few lines of Python code." | ||
|
||
toolchain = {'name': 'foss', 'version': '2020b'} | ||
toolchainopts = {'openmp': True} | ||
|
||
dependencies = [ | ||
('Python', '3.8.6'), | ||
('SciPy-bundle', '2020.11'), | ||
('zlib', '1.2.11'), | ||
] | ||
|
||
use_pip = True | ||
exts_default_options = {'source_urls': [PYPI_SOURCE]} | ||
|
||
exts_list = [ | ||
('astor', '0.8.1', { | ||
'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'], | ||
}), | ||
('pymbar', '3.0.5', { | ||
'checksums': ['b079a7d0b9fbc8a92850277b664bb582991ef5ac399b3607e695569148f6c784'], | ||
}), | ||
# must be astunparse < 1.6.3 with Python 3.8, see https://github.com/mdtraj/mdtraj/pull/1621 | ||
('astunparse', '1.6.2', { | ||
'checksums': ['dab3e426715373fd76cd08bb1abe64b550f5aa494cf1e32384f26fd60961eb67'], | ||
}), | ||
('mdtraj', version, { | ||
'checksums': ['f22c28c9dd51aa0f8692078dd3c2c7a338a7ca27cbd9aaeb669a60361e95adc4'], | ||
}), | ||
] | ||
|
||
# The unit tests of MDTraj are a pain to get to work: they require | ||
# a massive number of extra dependencies. See | ||
# https://github.com/mdtraj/mdtraj/blob/master/devtools/conda-recipe/meta.yaml | ||
|
||
sanity_pip_check = True | ||
|
||
moduleclass = 'chem' |
45 changes: 45 additions & 0 deletions
45
easybuild/easyconfigs/m/MDTraj/MDTraj-1.9.5-intel-2020b.eb
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,45 @@ | ||
# Updated: Pavel Grochal (INUITS) | ||
|
||
easyblock = 'PythonBundle' | ||
|
||
name = 'MDTraj' | ||
version = '1.9.5' | ||
|
||
homepage = 'https://mdtraj.org' | ||
description = "Read, write and analyze MD trajectories with only a few lines of Python code." | ||
|
||
toolchain = {'name': 'intel', 'version': '2020b'} | ||
toolchainopts = {'openmp': True} | ||
|
||
dependencies = [ | ||
('Python', '3.8.6'), | ||
('SciPy-bundle', '2020.11'), | ||
('zlib', '1.2.11'), | ||
] | ||
|
||
use_pip = True | ||
exts_default_options = {'source_urls': [PYPI_SOURCE]} | ||
|
||
exts_list = [ | ||
('astor', '0.8.1', { | ||
'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'], | ||
}), | ||
('pymbar', '3.0.5', { | ||
'checksums': ['b079a7d0b9fbc8a92850277b664bb582991ef5ac399b3607e695569148f6c784'], | ||
}), | ||
# must be astunparse < 1.6.3 with Python 3.8, see https://github.com/mdtraj/mdtraj/pull/1621 | ||
('astunparse', '1.6.2', { | ||
'checksums': ['dab3e426715373fd76cd08bb1abe64b550f5aa494cf1e32384f26fd60961eb67'], | ||
}), | ||
('mdtraj', version, { | ||
'checksums': ['f22c28c9dd51aa0f8692078dd3c2c7a338a7ca27cbd9aaeb669a60361e95adc4'], | ||
}), | ||
] | ||
|
||
# The unit tests of MDTraj are a pain to get to work: they require | ||
# a massive number of extra dependencies. See | ||
# https://github.com/mdtraj/mdtraj/blob/master/devtools/conda-recipe/meta.yaml | ||
|
||
sanity_pip_check = True | ||
|
||
moduleclass = 'chem' |