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20 Open 78 Closed
20 Open 78 Closed
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Issues list

numpy 2.x
#105 opened Jan 8, 2025 by james-cranley
1
NameError: name 'warnings' is not defined
#104 opened Dec 22, 2024 by edoumazane
The usage matrix values are na
#102 opened Oct 23, 2024 by weiju455
Cophenetic correlation plot
#101 opened Oct 18, 2024 by Rafael-Silva-Oliveira
How should we choose the input matrix for other single-cell batch effect removal methods, excluding Harmony?
#99 opened Oct 15, 2024 by WyzhaoJo
Difference between gene_spectra_score.k_3.dt_0_1.txt and gene_spectra_tpm.k_3.dt_0_1.txt
#98 opened Oct 8, 2024 by tujchl
Error occurred after Integration of batches.
#97 opened Sep 29, 2024 by zhrmxxs
1
Number of Iterations for every k value
#95 opened Sep 8, 2024 by kelvinmo0513
Batch correction when capturing meta-program from multiple samples
#94 opened Aug 7, 2024 by Jasonqte
1
Batch correction for Seurat objects
#91 opened Jun 21, 2024 by danafd
2
How to use more than 1 worker in Jupyter?
#90 opened Jun 1, 2024 by christophechu
2
An error of cnmf combine
#89 opened May 26, 2024 by Lyu-Gaoyuan
1
Applying cNMF on semi-supervised scRNA clustering
#87 opened May 22, 2024 by liangxs7015
2
highly variable genes problem
#85 opened May 19, 2024 by snow55
1
Estimating Usage of GEP in another data set?
#84 opened May 18, 2024 by DiegoSafian
4
no top_genes in outputs
#81 opened Apr 12, 2024 by DiegoSafian
4
Discrepancies in 'k' Output: Command Line vs. Python Environment
#75 opened Oct 26, 2023 by mluciarr
4
HOW to continue cnmf-factorize?
#61 opened Feb 14, 2023 by CoolCurl
2
The nmf running error on python3.7.13 version
#41 opened Jul 28, 2022 by honghh2018
2
ValueError: shapes (7,78103) and (56262,999) not aligned: 78103 (dim 1) != 56262 (dim 0)
#31 opened Mar 28, 2022 by johnjeang
9
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