Add support for dimod 0.10

.circleci/config.yml

@@ -1,160 +1,213 @@
-version: 2
+version: 2.1
 
 jobs:
+  test-linux:
+    parameters:
+      python-version:
+        type: string
+      dimod-version:
+        type: string
 
-  #
-  # linux
-  #
-
-  test-3.9: &test-linux-template
     docker:
-      - image: circleci/python:3.9.0
+      - image: circleci/python:<< parameters.python-version >>
 
     steps:
       - checkout
-      - restore_cache:
-          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
-      - run: python -m virtualenv env
-      - run: env/bin/pip install -r requirements.txt -r tests/requirements.txt -r docs/requirements.txt
-      - save_cache:
-          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
-          paths:
-            - env
-      - run: env/bin/pip install .
-      - run: env/bin/coverage run -m unittest discover
-      - run:
-          name: codecov
+
+      - restore_cache: &restore-cache-env
+          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
+
+      - run: &create-virtualenv
+          name: Create virtual environment
           command: |
-            . env/bin/activate
-            codecov   # calls `coverage xml`, so we must activate venv
-      - run:
-          name: doctest
+            python -m venv env
+
+      - run: &install-requirements
+          name: Install requirements
           command: |
             . env/bin/activate
-            make -C docs/ doctest
+            pip install -U pip
+            pip install -r requirements.txt -r tests/requirements.txt
+            pip install wheel twine
 
       - run:
-          name: linkcheck
+          name: Install appropriate dimod version
           command: |
             . env/bin/activate
-            make -C docs/ linkcheck
+            if [[ "<< parameters.dimod-version >>" ]]; then
+              pip install 'dimod<< parameters.dimod-version >>'
+            else
+              pip uninstall dimod -y
+            fi
+
+      - save_cache: &save-cache-env
+          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
+          paths:
+            - env
 
-  test-3.8:
-    <<: *test-linux-template
-    docker:
-      - image: circleci/python:3.8.6
+      - run: &build-package
+          name: Build package
+          command: env/bin/python setup.py sdist bdist_wheel
 
-  test-3.7:
-    <<: *test-linux-template
-    docker:
-      - image: circleci/python:3.7.9
+      - run: &install-package
+          name: Install package
+          command: env/bin/pip install .
 
-  test-3.6:
-    <<: *test-linux-template
-    docker:
-      - image: circleci/python:3.6.12
+      - run: &run-python-tests
+          name: Run Python tests
+          command: env/bin/coverage run -m unittest discover
+
+      - run: &upload-python-code-coverage
+          name: Upload code coverage
+          command: |
+            . env/bin/activate
+            codecov     # calls `coverage xml`, so we must activate venv
 
-  #
-  # macos
-  #
+  test-macos:
+    parameters:
+      python-version:
+        type: string
+      xcode:
+        type: string
 
-  test-osx-3.9: &test-osx-template
     macos:
-      xcode: "12.3.0"
-    environment:
-      PYTHON: 3.9.0
+      xcode: << parameters.xcode >>
+
     steps:
       - checkout
-      - run: HOMEBREW_NO_AUTO_UPDATE=1 brew install pyenv
-      - restore_cache:
+
+      # install `python-version` and cache it
+      - run: &brew-install-pyenv
+          name: Install pyenv
+          command: HOMEBREW_NO_AUTO_UPDATE=1 brew install pyenv
+
+      - restore_cache: &restore-cache-pyenv
           keys:
-            - pyenv-{{ .Environment.CIRCLE_JOB }}-xcode-12.3.0
-      - run: pyenv install $PYTHON -s
-      - save_cache:
-          key: pyenv-{{ .Environment.CIRCLE_JOB }}-xcode-12.3.0
+            - v1-pyenv-{{ .Environment.CIRCLE_JOB }}-xcode-<< parameters.xcode >>
+
+      - run: &pyenv-install-python
+          name: Install python
+          command: pyenv install << parameters.python-version >> -s
+
+      - run: &pyenv-set-system-python
+          name: Set system python
+          command: |
+            pyenv global << parameters.python-version >>
+            echo 'eval "$(pyenv init -)"' >> ~/.bash_profile
+
+      - save_cache: &save-cache-pyenv
+          key: v1-pyenv-{{ .Environment.CIRCLE_JOB }}-xcode-<< parameters.xcode >>
           paths:
             - ~/.pyenv
-      - run:
-          name: create virtualenv
-          command: |
-            eval "$(pyenv init -)"
-            pyenv local $PYTHON
-            python -m pip install virtualenv
-            python -m virtualenv env
+
+      # install dependencies and cache them
+      - restore_cache: *restore-cache-env
+
+      - run: *create-virtualenv
+
+      - run: *install-requirements
+
+      - save_cache: *save-cache-env
+
+      - run: *install-package
+
+      - run: *run-python-tests
+
+  test-docs:
+    docker:
+      - image: circleci/python:3.7
+
+    steps:
+      - checkout
+
       - restore_cache:
-          keys:
-          - v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
-      - run: &install-dependencies-template
-          name: install dependencies
-          command: |
-            . env/bin/activate
-            python --version
-            pip install -r requirements.txt -r tests/requirements.txt
+          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
+
+      - run: *create-virtualenv
+
+      - run: *install-requirements
+
+      - run:
+          name: Install docs requirements
+          command: env/bin/pip install -r docs/requirements.txt
+
       - save_cache:
+          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
           paths:
             - env
-          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-{{ .Environment.CIRCLE_JOB }}
-      - run: env/bin/pip install .
-      - run: env/bin/coverage run -m unittest discover
 
-  test-osx-3.8:
-    <<: *test-osx-template
-    environment:
-      PYTHON: 3.8.6
+      - run: *install-package
 
-  test-osx-3.7:
-    <<: *test-osx-template
-    environment:
-      PYTHON: 3.7.9
+      - run:
+          name: Build docs
+          command: |
+            . env/bin/activate
+            make -C docs/ html
 
-  test-osx-3.6:
-    <<: *test-osx-template
-    environment:
-      PYTHON: 3.6.12
+      - store_artifacts:
+          path: ./docs/build/html
 
-  #
-  # deploy
-  #
+      - run:
+          name: Test docs
+          command: |
+            . env/bin/activate
+            make -C docs/ doctest
+
+      - run:
+          name: Test links
+          command: |
+            . env/bin/activate
+            make -C docs/ linkcheck
 
   pypi-deploy:
-    <<: *test-linux-template
+    docker:
+      - image: circleci/python:3.7
+
     steps:
       - checkout
-      - restore_cache:
-          key: v1-dependencies-{{ checksum "requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "docs/requirements.txt" }}-test-3.9
-      - run: env/bin/pip install wheel twine
-      - run: env/bin/python setup.py sdist bdist_wheel
+
+      - restore_cache: *restore-cache-env
+
+      - run: *create-virtualenv
+
+      - run: *install-requirements
+
+      - save_cache: *save-cache-env
+
+      - run: *build-package
+
       - store_artifacts:
-          path: dist
-      - run: env/bin/twine upload -u "$PYPI_USERNAME" -p "$PYPI_PASSWORD" --skip-existing ./dist/*
+          path: ./dist
+
+      - run:
+          name: Upload package to PyPI
+          command: env/bin/twine upload -u "$PYPI_USERNAME" -p "$PYPI_PASSWORD" --skip-existing ./dist/*
 
 
 workflows:
-  version: 2
   test:
     jobs:
-      - test-3.9
-      - test-3.8
-      - test-3.7
-      - test-3.6
-      - test-osx-3.9
-      - test-osx-3.8
-      - test-osx-3.7
-      - test-osx-3.6
+      - test-linux:
+          name: test-linux-py<< matrix.python-version >><<# matrix.dimod-version >>-dimod<< matrix.dimod-version >><</ matrix.dimod-version >>
+          matrix:
+            parameters:
+              python-version: &python-versions ["3.6.12", "3.7.9", "3.8.6", "3.9.0"]
+              dimod-version: ["~=0.8.0,>=0.8.11", "~=0.9.0", "~=0.10.0,>0.10.4"]
+
+      - test-macos:
+          name: test-macos-py<< matrix.python-version >>
+          matrix:
+            parameters:
+              python-version: *python-versions
+              xcode: ["12.3.0"]
+
+      - test-docs
 
   deploy:
     jobs:
-      - test-3.8:
-          filters:
-            tags:
-              only: /^[0-9]+(\.[0-9]+)*(\.dev([0-9]+)?)?$/
-            branches:
-              ignore: /.*/
       - pypi-deploy:
-          requires:
-            - test-3.8
           filters:
             tags:
-              only: /^[0-9]+(\.[0-9]+)*(\.dev([0-9]+)?)?$/
+              only: /^[0-9]+(\.[0-9]+)*((\.dev|rc)([0-9]+)?)?$/
             branches:
               ignore: /.*/

docs/requirements.txt

@@ -1,3 +1,3 @@
-sphinx
+sphinx>=4.0.0,<5.0.0
 sphinx_rtd_theme
 recommonmark

hybrid/utils.py

@@ -153,7 +153,7 @@ def bqm_induced_by(bqm, variables, sample):
         subbqm.add_variable(u, bias)
 
     # no point in having offset since we're fixing only variables on boundary
-    subbqm.remove_offset()
+    subbqm.offset = 0
 
     return subbqm
 
@@ -178,8 +178,9 @@ def bqm_edges_between_variables(bqm, variables):
 
         >>> import dimod
         >>> bqm = dimod.BQM({}, {(0, 1): 1, (1, 2): 1, (2, 3): 1}, 0, 'BINARY')
-        >>> bqm_edges_between_variables(bqm, {0, 1, 3})
-        [(0, 1), (0, 0), (1, 1), (3, 3)]
+        >>> edges = bqm_edges_between_variables(bqm, {0, 1, 3})
+        >>> edges       # doctest: +SKIP
+        [(0, 1), (0, 0), (1, 1), (3, 3)]    # note: order not defined
 
     """
     variables = set(variables)
@@ -598,7 +599,7 @@ def hstack_samplesets(base, *others, **kwargs):
     # copy over samplesets, one by one, from left to right
     for ss in samplesets:
         ss.change_vartype(vartype)
-        mask = [variables.index[v] for v in ss.variables]
+        mask = [variables.index(v) for v in ss.variables]
         samples[:, mask] = ss.record.sample[:num_samples]
 
     if bqm is None:

requirements.txt

@@ -1,11 +1,11 @@
-dimod>=0.9.11
+dimod==0.10.6
 numpy>=1.19.4
-minorminer>=0.2.0
-dwave-system>=1.0.0
-dwave-neal>=0.5.1
-dwave-tabu>=0.4.0
-dwave-greedy>=0.2.0
+minorminer==0.2.6
+dwave-system==1.8.0
+dwave-neal==0.5.8
+dwave-tabu==0.4.2
+dwave-greedy==0.2.1
 networkx
-dwave-networkx>=0.8.6
+dwave-networkx==0.8.9
 click
 plucky>=0.4.3

setup.py

@@ -12,9 +12,9 @@
 
 # Package requirements, minimal pinning
 install_requires = ['numpy>=1.15.0', 'networkx', 'click>5', 'plucky>=0.4.3',
-                    'dimod>=0.8.11', 'minorminer>=0.1.7', 'dwave-networkx>=0.6.6',
-                    'dwave-system>=0.7.6', 'dwave-neal>=0.5.1', 'dwave-tabu>=0.2.0',
-                    'dwave-greedy>=0.1.0']
+                    'dimod>=0.8.11,<0.11,!=0.10.0,!=0.10.1,!=0.10.2,!=0.10.3,!=0.10.4',
+                    'minorminer>=0.1.7', 'dwave-networkx>=0.6.6', 'dwave-system>=0.7.6',
+                    'dwave-neal>=0.5.1', 'dwave-tabu>=0.2.0', 'dwave-greedy>=0.1.0']
 
 # Package extras requirements
 extras_require = {