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A tool that allows to get UMI counts from a single cell protein assay

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dtenenba/CITE-seq-Count

 
 

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CITE-seq-Count

A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.

IMPORTANT NEWS

There was a major bug in version 1.3.4 of CITE-seq-Count. The results were in read counts and not in UMI counts.

This is fixed in version 1.4.0 or above. Please rerun your data as this might provide a cleaner result for your data.

Here is the website referencing the wetlab protocols needed https://cite-seq.com/

Installation

pip install CITE-seq-Count==1.4.5

The official documentation can be found here

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A tool that allows to get UMI counts from a single cell protein assay

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