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updating headers and some titles with capitalizing
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lisagoodrich committed Oct 23, 2023
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9 changes: 5 additions & 4 deletions docs/Users_Guide/barplots.rst
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*********
Bar Plots
=========
*********

Description
-----------
===========

A bar plot shows comparisons among discrete categories. One axis of the
chart shows the specific categories being compared, while the other
Expand All @@ -22,7 +23,7 @@ Bar plots often represent counts or frequencies, however, bar plots can
represent means, medians, standard deviations, or any other statistic.

How-To
-------
======

Selection of options to produce the plot proceeds approximately
counter-clockwise around the METviewer window. The steps to create a series
Expand Down Expand Up @@ -92,7 +93,7 @@ plot are:
There are many other options for plots, but these are the basics.

Example
--------
=======

The image below shows an example of the plot and set-up options for a
series plot in METviewer. This example uses the database
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10 changes: 6 additions & 4 deletions docs/Users_Guide/batch.rst
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*********************
Batch Plotting Module
=====================
*********************

The batch plotting system is used to generate a number of plots of data in
the METviewer database. The usage statement:
Expand Down Expand Up @@ -439,10 +440,11 @@ starting at 1 for each fcst_var.
|
MODE Statistics
---------------
===============

Single Object Statistics
~~~~~~~~~~~~~~~~~~~~~~~~
------------------------

MODE statistics are broken up into two categories: single and pair
statistics. Single statistics are suffixed with a three letter code which
indicates the group of objects over which the statistic should be calculated
Expand Down Expand Up @@ -597,7 +599,7 @@ RATIO\_ with AREARAT\_ and OBJ with OBJA.
- OBJFBIAS

Pair Object Statistics
~~~~~~~~~~~~~~~~~~~~~~
----------------------

MODE object pair statistics are specified using the following format:
STATNAME_CC where STATNAME is one of the Object Pair Statistics in the
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9 changes: 5 additions & 4 deletions docs/Users_Guide/boxplot.rst
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*********
Box Plots
=========
*********

Description
-----------
===========

Box plots, or box and whisker plots, are a way to summarize a distribution
of values using Tukey's 5-number summary
Expand All @@ -27,7 +28,7 @@ threshold. Here, each forecast and observation is binary, but the
verification statistic is continuous.

How-To
---------
======

Selection of options to produce the plot proceeds approximately
counter-clockwise around the METviewer window. The steps to create a
Expand Down Expand Up @@ -105,7 +106,7 @@ There are many other options for plots, but these are the basics.


Example
--------
=======

The example below shows a boxplot of the RMSE for 2m temperature over
the CONUS. Many of the standard METviewer plotting options are available
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3 changes: 2 additions & 1 deletion docs/Users_Guide/common.rst
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*********************
Common XML Structures
=====================
*********************

The database loading module and batch plotting module both use XML input files. Some XML structures can be used in either input file. These common structures are documented below.

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9 changes: 5 additions & 4 deletions docs/Users_Guide/contourplot.rst
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*************
Contour Plots
=============
*************

Description
-----------
===========

Contour plots are a very general plot type somewhat similar to a scatter
plot. The axes are specified by the user, and any will do so long as the
Expand All @@ -13,7 +14,7 @@ examine the difference in statistics between two NWP models as a contour
plot, as is shown in the example below.

How-To
-------
======

Selection of options to produce the plot proceeds approximately
counter-clockwise around the METviewer window. The steps to create a contour
Expand Down Expand Up @@ -76,7 +77,7 @@ plot are:
There are many other options for plots, but these are the basics.

Example
--------
=======

The example is a contour plot of temperature mean error (bias) for one
model at different pressure levels over a range of initialization times.
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8 changes: 5 additions & 3 deletions docs/Users_Guide/database_loading.rst
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***********************
Database Loading Module
=======================
***********************

The database loading module is used to insert, update, and delete MET output
data in the database. The tool is invoked using the mv_load.sh script. The
Expand Down Expand Up @@ -134,7 +135,7 @@ change it to
Example
-------
=======

Here is a simple example:

Expand Down Expand Up @@ -203,7 +204,8 @@ specified by the <date_offset> named folder_dates.
...
Troubleshooting
---------------
===============

.. _test:

.. list-table::
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5 changes: 3 additions & 2 deletions docs/Users_Guide/database_scrubbing.rst
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*************************
Database Scrubbing Module
=========================
*************************

The database scrubbing utility is used to to delete data from METviewer
databases that meets some user-specified selection criteria. The usage
Expand Down Expand Up @@ -58,7 +59,7 @@ performed (**FALSE**).
|
Examples
--------
========

**Example 1: Prune by describing the data (<fields>)**

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12 changes: 7 additions & 5 deletions docs/Users_Guide/eclvplots.rst
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******************************
Economic Cost/Loss Value Plots
==============================
******************************

Description
-----------
===========

The Economic Cost Loss Value statistic is sometimes also called the
Relative value score (:ref:`Richardson, 2000<Richardson>`;
Expand All @@ -23,11 +24,12 @@ The ECLV score can range from -:math:`\infty` to 1.
Like ROC diagrams, it gives information that can be used in decision making.

Line Type
---------
=========

ECLV requires the ECLV line type generated by either Point-Stat or Grid-Stat.

How-To
------
======

Selection of options to produce the ECLV plot proceeds approximately
counter-clockwise around the METviewer window.
Expand Down Expand Up @@ -81,7 +83,7 @@ counter-clockwise around the METviewer window.


Example
--------
=======

The figure below shows an ECLV plot. In this example, three different
forecasting systems are used to predict precipitation at two different
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9 changes: 5 additions & 4 deletions docs/Users_Guide/etb_plot.rst
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********************************
Equivalence Testing Bounds Plots
================================
********************************

Description
-----------
===========

A statistical hypothesis is an assertion about the distribution function for one or more random variables.
Generally, two hypotheses are considered, a null hypothesis denoted by H0, and an alternative denoted by
Expand Down Expand Up @@ -32,7 +33,7 @@ In this case, H0 is accepted if the CI bounds fall completely between the tolera
and H0 is rejected otherwise.

How-To
-------
======

Selection of options to produce the plot proceeds approximately
counter-clockwise around the METviewer window. The steps to create a
Expand Down Expand Up @@ -104,7 +105,7 @@ There are many other options for plots, but these are the basics.


Example
--------
=======

The image below shows an example of the plot and set-up options for a
series plot in METviewer. This example uses the database
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4 changes: 2 additions & 2 deletions docs/Users_Guide/index.rst
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============
############
User's Guide
============
############

**Foreword: A note to METviewer users**

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12 changes: 7 additions & 5 deletions docs/Users_Guide/installation.rst
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.. _install:

****************************
METviewer Installation Guide
============================
****************************

Introduction
------------
============

This chapter describes how to install METviewer. METviewer has been
developed and tested on Linux operating systems. Support for additional
platforms and compilers may be added in future releases.

Installing METviewer
--------------------
====================

METviewer relies on the following tools. These must be installed and tested
prior to installing METviewer:
Expand Down Expand Up @@ -118,7 +119,7 @@ clone `METdataio repository <https://github.com/dtcenter/METdataio>`_
git clone https://github.com/dtcenter/METdataio.git
Configure and build METviewer
_____________________________
-----------------------------

#. Configure the batch and loading tools:

Expand Down Expand Up @@ -225,7 +226,8 @@ _____________________________
ln -s /d3/projects/METViewer/src_dev/apps/verif/metviewer/sql/mv_mysql.sql mv_mysql.sql
Making a Database Accessible in the METviewer Web Application
-------------------------------------------------------------
=============================================================

To make a new database accessible in the METviewer Web Application click
on "Reload list of databases" button in the upper right corner of the
main JSP page. The list of available databases should be updated and a
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34 changes: 17 additions & 17 deletions docs/Users_Guide/overview.rst
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*********************
Overview of METviewer
=====================
*********************


Purpose and organization of the User's Guide
--------------------------------------------
Purpose and Organization of the User's Guide
============================================

The goal of this User's Guide is to provide basic information for users of
the METviewer database and display system to enable users to create plots
Expand All @@ -13,7 +13,7 @@ The METviewer User's Guide is organized as follows.


The Developmental Testbed Center (DTC)
--------------------------------------
======================================

METviewer has been developed, and will be maintained and enhanced, by the
Developmental Testbed Center (`DTC <http://www.dtcenter.org/>`_ ). The main
Expand All @@ -34,8 +34,8 @@ modeling community for testing and evaluation of new model capabilities,
applications in new environments, and so on.


METviewer goals and design philosophy
-------------------------------------
METviewer Goals and Design Philosophy
=====================================

The METviewer tool reads MET verification statistics output from a database
and creates plots using the R statistical package. The tool includes a web
Expand All @@ -55,7 +55,7 @@ private sector, and operational modeling and prediction centers.


METviewer Requirements
----------------------
======================

METviewer requires installation of Java, Apache / Tomcat, MySQL, and R
statistics.
Expand All @@ -70,7 +70,7 @@ statistics.
.. _userspec:

METviewer User Specifications
-----------------------------
=============================

The top menu allows the user to select a database and type for the plot.

Expand Down Expand Up @@ -121,7 +121,7 @@ trying to compare the skill of one or more predictions.


METviewer Output
----------------
================

METviewer output all appears in the tabbed boxes at the top right quadrant
of the web browser. The plot will show by default, but the user can click any
Expand Down Expand Up @@ -160,7 +160,7 @@ recommended that the user click through at least the plot and xml windows
and save this output.

METviewer Plot Formatting Specifications
----------------------------------------
========================================

METviewer plot formatting options appear in the tabbed boxes at the bottom
right quadrant of the web browser. The “Titles & Labels” tab will show by
Expand Down Expand Up @@ -193,7 +193,7 @@ reset all options to the defaults.


METviewer Series Formatting Specifications
------------------------------------------
==========================================

At the bottom of the METviewer window is the series formatting box. It allows
the user to control the minute details of each line on a plot, including
Expand All @@ -205,7 +205,7 @@ place (so subsequent plots are identical in format).


METviewer History Menu
----------------------
======================

Along the left of the METviewer GUI, hidden by default, is the history menu.
To open this menu, click the arrow at the top left side right underneath
Expand All @@ -215,8 +215,8 @@ from this menu to recover plots they may have neglected to save. Clicking
on the button showing loads the plot.


Future development plans
------------------------
Future Development Plans
========================

METviewer is an evolving verification database and display software package.
New capabilities are planned in controlled, successive version releases. Bug
Expand All @@ -226,8 +226,8 @@ releases of METviewer. Additionally, updates to accommodate new features of
the MET software are often required.


Code support
------------
Code Support
============

METviewer support is provided through the
`METplus GitHub Discussions Forum <https://github.com/dtcenter/METplus/discussions>`_.
Expand Down
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