Code

Feature 629 metdbload#882

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georgemccabe merged 195 commits intodevelopdtcenter/METplus:developfrom feature_629_metdbloaddtcenter/METplus:feature_629_metdbloadCopy head branch name to clipboardApr 14, 2021

+910-3

Commits

Commits on Mar 15, 2021

• add cfg file and script to obtain METdatadb repository

  

  George McCabe

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• started creating wrapper and config files

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Commits on Mar 16, 2021

• Merge branch 'develop' into feature_629_metdbload

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• added function to generate random tmp filename

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• implemented xml file string substitution

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• updated config files

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• added scripts to obtain METviewer

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• added new use case to list

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• only run new use case for testing

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• obtain METviewer from docker

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Commits on Mar 17, 2021

• remove commented dependency

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• make new script executable

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• skip unit tests for now

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• added comments with commands that will go into a script called inside metviewer docker container

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• added get image back

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• added get image back

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• log github context to easily see what is available to control

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• testing logic to only run new use cases

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• more only run new

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• try to skip based on matrix.categories in main.yml instead

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• fixed syntax issues

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• fixed syntax issues again

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• fixed missing quotes for commit message, try to skip step if previous step is skipped

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• missing quotes

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• parse out ci-skip-get-image from this commit message to skip get_image step

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• fix expression

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• add quotes

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• try again

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• try again again

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• added support for skipping some jobs via commit message

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• check value of run_ variable to see determine if job should be skipped

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• add quotes to comparison

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• debugging

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• set dependency for jobs to wait for job control job

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• more debugging

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• even more debugging

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• fix ident

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• add depend

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• another test

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• try saving job control status as artifact to read into env for each job

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• removed invalid line

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• typo

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• try read vars into env and echo

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• cat file not echo

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• list

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• fix cat command

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• test ci-skip-get-image

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• fix test for ci-skip-get-image

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• another test

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• another test2

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• test skip get image

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• test fixed ci-skip-get-image logic

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• removed logic to skip existing use cases from action

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• added job control logic to all jobs

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• added job control dependency to doc job

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• add diff control, add logic to auto run diff on PR into develop or main_v* and auto run save truth on -ref branch, added new skip/force keywords in commit message, this run should only run new use …

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• print job control settings after setting for easy reference, removed job used for testing

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• added rule to only run CI if there was at least 1 file outside of the docs directory was modified in the push event

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• added all use cases back to list but made default setting to only run new use cases

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• pass run diff boolean into run_tests action to determine if diff logic should run or not

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• fixed printing of job control status

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• added step to determine if the current use case group should be run, then reference the result for each subsequent step

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• fixed typo in if block

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• fixed typo in if block

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• fixed typo in if block

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• fixed broken if logic

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• remove skip run if change is only in docs dir, clean up

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• comment other use cases for test

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• attempt to fix condition logic

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• attempt2 to fix condition logic

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• moved logic to determine jobs to run into a shell sript

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• use full path to job control script

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• checkout code before calling script

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• set commit message and environment variable and pass it into script

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• added useful name description for check if use case should run, force running all cases by adding ci-force-all-cases

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• check values

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• minor change and use ci-force-all-cases

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• test again with ci-force-all-cases

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• changed single quote to double

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• Merge branch 'develop' into feature_629_metdbload

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• add documentation for CI

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• added back support for ci-docs-only, fixed check for -ref in branch name

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• remove comments and add back all use cases

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• moved logic to determine which jobs to run into a separate job, added support for keyword overrides in commit message, changed default push run to only run new use cases instead of all use cases, a…

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• added to add use case instructions to add ':NEW' to the end of a new use case added in the GitHub Actions yml file

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• minor change to test forcing diff logic with ci-force-diff

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• added doc about ci-docs-only keyword

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• changed climate use case group to NEW temporary to test that it only runs those cases and runs diff with ci-force-diff

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• removed NEW from climate group and only run doc by setting ci-docs-only

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• added logic to strip of :NEW from use case group name when getting artifact name

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• added back :NEW to climate group and retry diff test with ci-force-diff

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• if not pull request, use get develop branch truth data, ci-force-diff

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• removed NEW from climate group and skip all ci with ci-skip-all

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• changed script to bash to fix nested if blocks and ci-force-diff

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• removed incorrectly placed colon and ci-force-diff

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• set climate group to NEW AGAIN and ci-force-diff

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• removed NEW from climate group and run all use cases via ci-force-all-cases

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• remove extra == 'true' from boolean env vars that shouldn't be necessary, force all cases to run with ci-force-all-cases

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Commits on Mar 18, 2021

• when forcing diff logic, also set to run all use cases since new use cases aren't useful in diff results

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• rename step to be more descriptive

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• only apply commit message overrides if not pull request or -ref branch to preserve the behavior needed for those runs

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• merged feature_629_ci_keywords and resolved conflicts

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• Revert "remove extra == 'true' from boolean env vars that shouldn't be necessary, force all cases to run with ci-force-all-cases"

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• Revert "remove extra == 'true' from boolean env vars that shouldn't be necessary, force all cases to run with ci-force-all-cases"

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• Merge branch 'develop' into feature_629_ci_keywords

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• renamed keywords to be consistent

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• Merge branch 'feature_629_ci_keywords' into feature_629_metdbload

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• added steps to create METviewer database in CI

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• renamed variables to include MV_ and set values in conf to reflect database that will be created in GitHub Actions

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• try using docker-compose from METviewer main_v3.1 instead of develop

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• check if mysqld is running

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• sleep after starting database

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• longer sleep

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• added lxml python package to requirements for new use case

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• moved lxml python dependency into script to get metdatadb since it is required for that package, added PyMySQL as well

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• change settings to match data provided to XML script

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• add support for setting more values, fixed typo in username

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Commits on Mar 19, 2021

• changed host to metviewer_1:8080

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• longer sleep

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• changed database info back to correct value

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• try mapping the tcp ports so the use case can find the mysql database

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• print port forwarding info

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• added support for cip-skip-unit-tests

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• remove all port specification and let GitHub Actions use default port and ci-skip-unit-tests

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• fixed typo in ci-skip-unit-tests logic

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Commits on Mar 22, 2021

• print docker info

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• shut down ubuntu MySQL before setting up database for METviewer

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• added port back to mysql host

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• try mounting /var/lib/mysql so database is reachable from container

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• added to echo, ci-skip-unit-tests

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• changed volume mount to /var/run/mysqld, ci-skip-unit-tests

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• list mysqld dir, ci-skip-unit-tests

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• show databases, mount mysql dir into metplus container, ci-skip-unit-tests

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• fixed typo

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• set port in docker run, ci-skip-unit-tests

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• expose all ports ci-skip-unit-tests

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• use develop version of docker-compose from METviewer

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• switch back to main_v3.1 docker-compose, try setting port ci-skip-unit-tests

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• try docker IP as host ci-skip-unit-tests

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Commits on Mar 23, 2021

• set network value to container:mysql_mv in docker run command, change host to localhost ci-skip-unit-tests

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• write mysql and metviewer output to output directory so it is available in the artifacts

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• fixed path for mounting mysql directory

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• use develop docker-compose file from METviewer, add verbose option to docker compose command, move sleep before docker ps command, ci-skip-unit-tests

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• removed --verbose option that doesn't seem to work

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• merged develop and resolved conflicts

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• add docker-compose up db to see what is happening with mysql database ci-skip-unit-tests

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• try creating /var/lib/mysql dir so it is writable by mysql user ci-skip-unit-tests

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• open up write permissions for mysql dir ci-skip-unit-tests

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• open permissions for mysql, ci-skip-unit-tests

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• revert back to using root for mysql, ci-skip-unit-tests

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• switch back to develop metviewer, open up permissions ci-skip-unit-tests

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• added missing docker-compose up db command to see error messages ci-skip-unit-tests

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• open permissions for local dir instead of /var dir ci-skip-unit-tests

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• create dirs for database in separate step, ci-skip-unit-tests

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• list permissions ci-skip-unit-tests

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• list output dir ci-skip-unit-tests

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• explicitly create runner workspace mysql/metviewer dirs, ci-skip-unit-tests

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• updated METdbLoad wrapper to traverse through directory and add any directory that contains .stat or .tcst files to load into the METviewer database ci-skip-unit-tests

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• Merge branch 'develop' into feature_629_metdbload

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• removed docker compose call that was causing the job to hang

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• list output mysql dir to see permissions, ci-skip-unit-tests

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• fixed typo in XML

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• moved mysql directory up a level so it is output of the output directory ci-skip-unit-tests

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• list metviewer dir and try to copy its contents ci-skip-unit-tests

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• added sample XML file to use to load plot into METviewer

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• clean up testing commands

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Commits on Mar 24, 2021

• added documentation for new wrapper and use case ci-docs-only

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• removed extra quick search keyword that is not relevant

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Commits on Mar 30, 2021

• merged develop resolved conflicts

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• try moving METdatadb up a level

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• merged develop and resolved conflicts

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Commits on Mar 31, 2021

• Merge branch 'develop' into feature_629_metdbload

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• added METDbLoad to list of wrappers to convert name to correct camel case name

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• only obtain metviewer if it is in the list of requirements for the use case group

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• added additional use case to test that METviewer is only obtained if needed

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• only set --network argument to docker run if setting up metviewer database

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• removed extra use case for testing and comments

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• Update docs/use_cases/met_tool_wrapper/METdbLoad/METdbLoad.py

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