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Update develop-ref after #1825#1829

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JohnHalleyGotway merged 185 commits intodevelop-refdtcenter/MET:develop-reffrom developdtcenter/MET:developCopy head branch name to clipboardJun 13, 2021

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Commits on Jan 26, 2021

• Start on write netcdf pickle alternative.

  

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• Write dataplane array.

  

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• Start on read of netcdf as pickle alternative.

  

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Commits on Feb 2, 2021

• Create attribute variables.

  

  David Fillmore

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Commits on Feb 3, 2021

• Use global attributes for met_info attrs.

  

  David Fillmore

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Commits on Feb 4, 2021

• Add grid structure.

  

  David Fillmore

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• Read metadata back into met_info.attrs.

  

  David Fillmore

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• Convert grid.nx and grid.ny to int.

  

  David Fillmore

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• Rename _name key to name.

  

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• Removed pickle write.

  

  David Fillmore

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Commits on Feb 5, 2021

• Fixed write_pickle_dataplane to work for both numpy and xarray.

  

  David Fillmore

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• Use items() to iterate of key, value attrs.

  

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Commits on Feb 13, 2021

• Write temporary text file.

  

  David Fillmore

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Commits on Feb 17, 2021

• Renamed scripts.

  

  David Fillmore

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• Changed script names in Makefile.am.

  

  David Fillmore

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• Replaced pickle with tmp_nc.

  

  David Fillmore

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• Fixed wrapper script names.

  

  David Fillmore

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• Test for attrs in met_in.met_data.

  

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Commits on Feb 18, 2021

• Initial version of read_tmp_point module.

  

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• Added read_tmp_point.py to install list.

  

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• Start on Python3_Script::read_tmp_point.

  

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• Write MPR tmp ascii file.

  

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• Renamed to read_tmp_ascii to use for point point and MPR.

  

  David Fillmore

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• Renamed to read_tmp_ascii to use for point point and MPR.

  

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Commits on Feb 19, 2021

• Define Python3_Script::import_read_tmp_ascii_py.

  

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• Call Python3_Script::import_read_tmp_ascii_py.

  

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Commits on Feb 20, 2021

• Append MET_BASE/wrappers to sys.path.

  

  David Fillmore

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• Finished implementation of Python3_Script::import_read_tmp_ascii_py.

  

  David Fillmore

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• Call Python3_Script::read_tmp_ascii in python_handler.

  

  David Fillmore

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Commits on Feb 22, 2021

• Revised python3_script::read_tmp_ascii with call to run, PyRun_String.

  

  David Fillmore

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• Return PyObject* from Python3_Script::run.

  

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• Restored call to run_python_string for now.

  

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Commits on Feb 26, 2021

• Per #1429, enhance error message from DataLine::get_item(). (#1682)

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• Feature 1429 tc_log second try (#1686)

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• Feature 1588 ps_log (#1687)

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• #1454 Disabled plot_data_plane_CESM_SSMI_microwave and plot_data_plane_CESM_sea_ice_nc becaues of not evenly spaced

  

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• #1454 Moved NC attribute name to nc_utils.h

  

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• #1454 Corrected sanity checking for lat/lon projection based on the percentage of the delta instead of fixed tolerance

  

  Howard Soh

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• #1454 Corrected sanity checking for lat/lon projection based on the percentage of the delta instead of fixed tolerance

  

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Commits on Mar 1, 2021

• #1454 Corrected data.delta_lon

  

  Howard Soh

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• #1454 Change bact to use diff instead of absolute value of diff

  

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• 454 Deleted instea dof commenting out

  

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• 454 Deleted instea dof commenting out

  

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• Merge pull request #1688 from dtcenter/feature_1454_nccf_grid_definition

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Commits on Mar 2, 2021

• Feature 1684 bss and 1685 single reference model (#1689)

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• Per #1691, add met-10.0.0-beta4 release notes. (#1692)

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Commits on Mar 3, 2021

• Updated Python documentation

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Commits on Mar 4, 2021

• Per #1694, add VarInfo::magic_str_attr() to construct a field summary string from the name_attr() and level_attr() functions.

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• Per #1694, fixing 2 issues here. There was a bug in the computation of the max value. Had a less-than sign that should have been greater-than. Also, switch from tracking data by it's magic_str() to…

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Commits on Mar 5, 2021

• Per #1694, just switching to consistent variable name.

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• Just consistent spacing.

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• Merge pull request #1696 from dtcenter/bugfix_1694_grid_diag

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• Added python3_script::import_read_tmp_ascii.

  

  David Fillmore

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• Merge branch 'develop' into feature_1319_no_pickle

  

  David Fillmore

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• Restored read_tmp_ascii call.

  

  David Fillmore

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• Added lookup into ascii module.

  

  David Fillmore

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• Adding files for ReadTheDocs

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• Adding .yaml file for ReadTheDocs

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• Updated path to requirements.txt file

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• Updated path to conf.py file

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• Removing ReadTheDocs files and working in separate branch

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Commits on Mar 7, 2021

• Return PyObject* from read_tmp_ascii.

  

  David Fillmore

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• Put point_data in global namespace.

  

  David Fillmore

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• Remove temporary ascii file.

  

  David Fillmore

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• Added tmp_ascii_path.

  

  David Fillmore

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• Removed read_obs_from_pickle.

  

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Commits on Mar 9, 2021

• Trying different options for formats (#1702)

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Commits on Mar 10, 2021

• Per #1706, add bugfix to the develop branch. Also add a new job to unit_stat_analysis.xml to test out the aggregation of the ECNT line type. This will add new unit test output and cause the NB to f…

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• Feature 1471 python_grid (#1704)

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Commits on Mar 11, 2021

• Committing a fix for unit_python.xml directly to the develop branch. We referenced in a place where it's not defined.

  

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• Merge branch 'develop-ref' into develop

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• Add *.dSYM to the .gitignore files in the src and internal_tests directories.

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Commits on Mar 12, 2021

• Replaced tmp netcdf _name attribute with name_str.

  

  David Fillmore

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Commits on Mar 15, 2021

• Append user script path to system path.

  

  David Fillmore

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• Merge pull request #1699 from dtcenter/feature_1319_no_pickle

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• Revert "Feature 1319 no pickle" (#1717)

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Commits on Mar 17, 2021

• Fixed typos, added content, and modified release date format

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Commits on Mar 18, 2021

• #1715 Initial release

  

  Howard Soh

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• #1715 Do not combined if there are no overlapping beteewn TQZ and UV records

  

  Howard Soh

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• #1715 Added pb2nc_compute_pbl_cape

  

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• #1715 Added pb2nc_compute_pbl_cape

  

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• #1715 Reduced obs_bufr_var. Removed pb_report_type

  

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• #1715 Added a blank line for Error/Warning

  

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• Merge pull request #1719 from dtcenter/bugfix_1715_pb2nc_seg_fault_with_pbl

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Commits on Mar 19, 2021

• Per #1725, return good status from TrackInfoArray::add() when using an ATCF line to create a new track. (#1726)

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• Per #1705, update the threshold node heirarchy by adding a climo_prob() function to determine the climatological probability of a CDP-type threshold. Also update derive_climo_prob() in pair_base.cc…

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• Bugfix 1716 develop perc_thresh (#1722)

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• Update pull_request_template.md

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Commits on Mar 29, 2021

• Feature 1733 exc (#1734)

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Commits on Mar 30, 2021

• Bugfix 1737 develop little_r (#1739)

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Commits on Apr 1, 2021

• Feature GitHub actions (#1742)

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• Feature 1575 large_diffs (#1741)

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Commits on Apr 2, 2021

• Feature 1319 no pickle (#1720)

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Commits on Apr 4, 2021

• Feature 1736 out_stat (#1744)

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• Per #1319, this is a hotfix to the develop branch. While running unit_python.xml works via the command line, it fails when run through cron. The problem is the PATH setting. Need to have the anacon…

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• Merge branch 'develop' of https://github.com/dtcenter/MET into develop

  

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Commits on Apr 5, 2021

• Just lining up a log message in the output of gen_vx_mask.

  

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• Per #1319, setting PATH as an envvar might cause problems. All variables set prior to the test are unset afterwards! So we'd run all the rest of the tests after unit_python.xml with an empty path. …

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• Trying to get the PATH setting correct for unit_python.xml.

  

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• Changed weblink for METplus documentation

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• per #1319 added netCDF4 python package to MET docker image so it is available for python embedding cases that use MET_PYTHON_EXE

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Commits on Apr 6, 2021

• Feature 1747 pylonglong (#1748)

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Commits on Apr 7, 2021

• Hotfix for the develop branch in tc_pairs.cc. The METplus unit tests kept failing through GHA with a divide by zero error. It occurs in compute_track_err() but only for a very specific set of data.…

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Commits on Apr 9, 2021

• Turned specific section numbers into linked sections because section numbers can change

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• Removed hard-coded references to section numbers

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• Feature 1714 tc_gen (#1750)

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Commits on Apr 12, 2021

• Merge branch 'develop-ref' into develop

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Commits on Apr 14, 2021

• feature_1552_gcc_10 (#1752)

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Commits on Apr 15, 2021

• #1755 Support time string for slicing at MetNcCFDataFile::collect_time_offsets

  

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• #1755 Support time string for slicing at MetNcCFDataFile::collect_time_offsets

  

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• Merge pull request #1756 from dtcenter/bugfix_1755_nccf_timelevel_by_string

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Commits on Apr 16, 2021

• Feature 1735 stat_analysis (#1754)

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• Per #1753, this one change to write_tmp_data.py solves this problem. When creating the variable to write the temp NetCDF file, we just need to pass through the fill value for the data. Also, make t…

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• Per #1753, make the read_tmp_dataplane.py script less verbose.

  

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• Per #1753, there are 3 calls to the user's python version throughout MET. Update all 3 to print consistent log message when writing/reading the temp file. In particular, print the system command th…

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• Merge remote-tracking branch 'origin/develop' into feature_1753_python_fill

  

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• Merge branch 'feature_1753_python_fill' into develop

  

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• Per #1753, wrap the call to get_fill_value() in a try block in case the input in a regular numpy array instead of a masked array.

  

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Commits on Apr 22, 2021

• Per #1620, correct bug in read_ascii_mpr.py script. The MPR line type has 37 columns in it, not 36! (#1760)

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Commits on Apr 26, 2021

• Feature 1700 python (#1765)

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• Feature 1766 v10.0.0_beta5 (#1767)

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Commits on Apr 27, 2021

• Merge branch 'develop-ref' into develop

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• Bugfix 1768 edeck (#1769)

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Commits on Apr 28, 2021

• Feature 1771 release_notes (#1772)

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• Committing hotfix to the develop branch to fix a bad merge that caused the MET compilation to fail.

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Commits on Apr 29, 2021

• Update compile_MET_all.sh

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Commits on May 3, 2021

• Update pull_request_template.md

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• Per #1731, add ioda2nc documentation.

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Commits on May 4, 2021

• Changes to make the authorship list consistent with METplus.

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• Rename CIR to CIRA.

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Commits on May 5, 2021

• Per #1731, fix alignment issued caused by tabs vs spaces.

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• Per #1777, fixing memory management in DbfHeader::set_subrecords(). It is dynamically allocating a buffer based on the record_legnth (e.g. 5) but then reading 32 characters into it! Deleting the dy…

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• Feature 1731 authorship (#1776)

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Commits on May 7, 2021

• Updated input sources to include newly acceptable data formats

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• Per #1731, add more details about the grid-diag bin definition.

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• Merge branch 'feature_1731_docs' of https://github.com/dtcenter/MET into feature_1731_docs

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• Per #1731, clarify wording.

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• Update met/docs/Users_Guide/tc-pairs.rst

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• Changes to align Xarray language with that used in Xarray documentation, to clarify only DataArray Xarray structures are supported and not Xarray Dataset structures, and an example of how to quickl…

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• Corrects plural of DataArray.

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• Aligns references to NumPy arrays with NumPy docs to refer to them as ndarrays.

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• #1782 Set the time offset to 0 if the time dimension does not exist at the data variable

  

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• Merge pull request #1784 from dtcenter/feature_1468_pyembed_docs

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• Feature 1778 debug (#1785)

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• Made suggested changes by Tara Jensen

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• Update python embedding docs to list required packages for the base python version.

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• Feature 1786 v10.0.0 (#1787)

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• Per #1789, remove duplicate plot_point_obs configuration section. (#1791)

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• Update the version of Fortify on kiowa from 19.2.0 to 20.2.1.

  

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• #1795 Release memory at time_values

  

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• Bugfix 1798 develop py_grid_string (#1800)

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• #1794 Corrected the offset for Filter

  

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• Github Issue #1801: Comment out code that checks for BEST track to support extra-tropical cyclone tracks not verified against BEST tracks.

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• #1795 Cleanup

  

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• #1795 Create DataCube for 2D or 3D only, not both to avoid memory leak

  

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• Bugfix 1395 develop comp script (#1804)

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• Gitub Issue #1801 Remove code that checks for -bmodel filter to support plotting of extra-tropical cyclone tracks that aren't verified against BEST tracks.

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• Merge branch 'develop-ref' into develop

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• Migrate issue and PR template changes from PR #1803 into the develop branch so that they'll be available for future releases.

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• Per met-help question (https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=99964) clarify the description of the obs_thresh option.

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• Update README.md

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• changed non-unicode apostrophe and fixed typo in URL

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• Feature 1581 api point obs (#1812)

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• Feature 1792 gen_vx_mask (#1816)

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• Fix 2 minor formatting errors in the release notes.

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• PR #1816 for issue #1792 unexpectedly caused the NB to fail on 20210605. We changed -type from optional to required, but missed adding the -type option in unit_met_test_scripts.xml and unit_ref_con…

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• Feature 1811 anchor links (#1822)

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• Feature 1749 hss (#1825)

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• Feature 1826 v10.1.0_beta1 (#1828)

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• Revoming Randy and David from the email notification list for nightly run scripts.

  

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• Merge branch 'develop-ref' into develop

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