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Per #1546, move steps to install external libraries needed to install…
… MET and tools needed to run unit tests into seperate Dockerfiles
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,133 @@ | ||
| FROM centos:7 | ||
| MAINTAINER John Halley Gotway <johnhg@ucar.edu> | ||
|
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||
| # | ||
| # Define the compilers. | ||
| # | ||
| ENV CC /usr/bin/gcc | ||
| ENV CXX /usr/bin/g++ | ||
| ENV FC /usr/bin/gfortran | ||
| ENV F77 /usr/bin/gfortran | ||
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|
||
| # | ||
| # Define package URL's. | ||
| # | ||
| ENV HDF4_URL http://www.hdfgroup.org/ftp/HDF/releases/HDF4.2r3/src/HDF4.2r3.tar.gz | ||
| ENV HDFEOS_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/HDF-EOS2.16v1.00.tar.Z | ||
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| ENV NETCDF4C_URL https://github.com/Unidata/netcdf-c/archive/v4.4.1.1.zip | ||
| ENV NETCDF4CXX_URL https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz | ||
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| ENV BUFRLIB_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/BUFRLIB_v10-2-3.tar | ||
| ENV GSFONT_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/ghostscript-fonts-std-8.11.tar.gz | ||
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| # | ||
| # Install the required packages. | ||
| # | ||
| RUN yum -y update \ | ||
| && yum -y install file gcc gcc-gfortran gcc-c++ glibc.i686 libgcc.i686 \ | ||
| libpng-devel jasper jasper-devel zlib zlib-devel \ | ||
| cairo-devel freetype-devel epel-release \ | ||
| hostname m4 make tar tcsh ksh time wget which \ | ||
| flex flex-devel bison bison-devel unzip \ | ||
| && yum -y install git g2clib-devel hdf5-devel.x86_64 gsl-devel \ | ||
| && yum -y install gv ncview wgrib wgrib2 ImageMagick ps2pdf \ | ||
| && yum -y install python3 python3-devel python3-pip \ | ||
| && pip3 install --upgrade pip \ | ||
| && python3 -m pip install numpy xarray netCDF4 | ||
|
|
||
| # | ||
| # Set the working directory. | ||
| # | ||
| WORKDIR /met | ||
|
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||
| # | ||
| # Setup the environment for interactive bash/csh container shells. | ||
| # | ||
| RUN echo export MET_BASE=/usr/local/share/met >> /etc/bashrc \ | ||
| && echo setenv MET_BASE /usr/local/share/met >> /etc/csh.cshrc \ | ||
| && echo export MET_FONT_DIR=/usr/local/share/met/fonts >> /etc/bashrc \ | ||
| && echo setenv MET_FONT_DIR /usr/local/share/met/fonts >> /etc/csh.cshrc \ | ||
| && echo export RSCRIPTS_BASE=/usr/local/share/met/Rscripts >> /etc/bashrc \ | ||
| && echo setenv RSCRIPTS_BASE /usr/local/share/met/Rscripts >> /etc/csh.cshrc \ | ||
| && echo export LD_LIBRARY_PATH=/usr/local/lib >> /etc/bashrc \ | ||
| && echo setenv LD_LIBRARY_PATH /usr/local/lib >> /etc/csh.cshrc | ||
| ENV LD_LIBRARY_PATH /usr/local/lib | ||
|
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||
| # | ||
| # Download and install BUFRLIB. | ||
| # | ||
| RUN mkdir -p /met/logs \ | ||
| && mkdir -p /met/external_libs/BUFRLIB \ | ||
| && cd /met/external_libs/BUFRLIB \ | ||
| && echo "Downloading BUFRLIB from ${BUFRLIB_URL}" \ | ||
| && curl -SL ${BUFRLIB_URL} | tar xC /met/external_libs/BUFRLIB \ | ||
| && cat preproc.sh | sed 's/cpp /cpp -traditional-cpp /g' > preproc_patch.sh \ | ||
| && chmod +x preproc_patch.sh \ | ||
| && LOG_FILE=/met/logs/BUFRLIB_build.log \ | ||
| && echo "Compiling BUFRLIB and writing log file ${LOG_FILE}" \ | ||
| && ./preproc_patch.sh *.F > ${LOG_FILE} \ | ||
| && ${CC} -c -DUNDERSCORE *.c >> ${LOG_FILE} \ | ||
| && ${FC} -c -fno-second-underscore *.f >> ${LOG_FILE} \ | ||
| && ar crv libbufr.a *.o >> ${LOG_FILE} \ | ||
| && rm -f /usr/local/lib/libbufr.a \ | ||
| && cp *.a /usr/local/lib \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf BUFRLIB | ||
|
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||
| # | ||
| # Download and install NetCDF4 (C and C++). | ||
| # | ||
| RUN mkdir -p /met/external_libs/netcdf \ | ||
| && cd /met/external_libs/netcdf \ | ||
| && echo "Downloading netcdf-c-4.4.1.1 from ${NETCDF4C_URL}" \ | ||
| && wget ${NETCDF4C_URL} \ | ||
| && unzip v4.4.1.1.zip \ | ||
| && cd netcdf-c-4.4.1.1 \ | ||
| && LOG_FILE=/met/logs/netcdf-c-4.4.1.1_configure.log \ | ||
| && echo "Configuring netcdf-c-4.4.1.1 and writing log file ${LOG_FILE}" \ | ||
| && ./configure > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/netcdf-c-4.4.1.1_make_install.log \ | ||
| && echo "Compiling netcdf-c-4.4.1.1 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && echo "Downloading from ${NETCDF4CXX_URL}" \ | ||
| && cd /met/external_libs/netcdf \ | ||
| && wget ${NETCDF4CXX_URL} \ | ||
| && tar -xzf v4.3.0.tar.gz \ | ||
| && cd netcdf-cxx4-4.3.0 \ | ||
| && LOG_FILE=/met/logs/netcdf-cxx4-4.3.0_configure.log \ | ||
| && echo "Configuring netcdf-cxx4-4.3.0 and writing log file ${LOG_FILE}" \ | ||
| && ./configure > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/netcdf-cxx4-4.3.0_make_install.log \ | ||
| && echo "Compiling netcdf-cxx4-4.3.0 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf netcdf | ||
|
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||
| # | ||
| # Download and install HDF4 and HDFEOS. | ||
| # | ||
| RUN echo "Downloading HDF4.2r3 from ${HDF4_URL}" \ | ||
| && curl -SL ${HDF4_URL} | tar zxC /met/external_libs \ | ||
| && cd /met/external_libs/HDF4.2r3 \ | ||
| && LOG_FILE=/met/logs/HDF4.2r3_configure.log \ | ||
| && echo "Configuring HDF4.2r3 and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local/hdf --disable-netcdf > ${LOG_FILE} \ | ||
| && cat mfhdf/hdiff/Makefile | sed 's/LIBS = -ljpeg -lz/LIBS = -ljpeg -lz -lm/g' > Makefile_NEW \ | ||
| && mv -f Makefile_NEW mfhdf/hdiff/Makefile \ | ||
| && LOG_FILE=/met/logs/HDF4.2r3_make_install.log \ | ||
| && echo "Compiling HDF4.2r3 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && echo "Downloading hdfeos from ${HDFEOS_URL}" \ | ||
| && curl -SL ${HDFEOS_URL} | tar zxC /met/external_libs \ | ||
| && cd /met/external_libs/hdfeos \ | ||
| && LOG_FILE=/met/logs/hdfeos_configure.log \ | ||
| && echo "Configuring hdfeos and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local/hdfeos --with-hdf4=/usr/local/hdf CC=/usr/local/hdf/bin/h4cc > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/hdfeos_make_install.log \ | ||
| && echo "Compiling hdfeos and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && mkdir /usr/local/hdfeos/include \ | ||
| && cp include/*.h /usr/local/hdfeos/include/. \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf HDF4.2r3 hdfeos |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| ARG MET_BASE_IMAGE=minimum | ||
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| FROM dtcenter/met-base:${MET_BASE_IMAGE} | ||
| MAINTAINER John Halley Gotway <johnhg@ucar.edu> | ||
|
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||
| # | ||
| # Set the working directory. | ||
| # | ||
| WORKDIR /met | ||
|
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| # | ||
| # Download and install MET and GhostScript fonts. | ||
| # Delete the MET source code for tagged releases matching "v"*. | ||
| # | ||
| RUN echo "Installing tools needed for running MET unit tests..." \ | ||
| && echo "Installing Perl XML Parser..." \ | ||
| && yum makecache \ | ||
| && yum -y install perl-XML-Parser \ | ||
| && echo "Installing R..." \ | ||
| && yum -y install R \ | ||
| && echo "Installing R ncdf4 1.19..." \ | ||
| && wget https://cran.r-project.org/src/contrib/ncdf4_1.19.tar.gz \ | ||
| && R CMD INSTALL ncdf4_1.19.tar.gz \ | ||
| && echo "Installing NCO (for ncdiff)..." \ | ||
| && yum -y install nco \ | ||
| && echo "Finished installing unit test tools" |