Updating database #1175
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Updating database #1175
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… namespaces and addition of timestamp. need to test that queries work correctly
ntran18
commented
Feb 19, 2025
server/dals/network-dal.js
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| gene_regulatory_network.gene WHERE (gene.gene_id ='${gene}' | ||
| OR gene.display_gene_id ='${gene}')`; | ||
| ${namespace} WHERE (gene.gene_id ='${gene}' | ||
| OR gene.display_gene_id ='${gene}') AND gene.time_stamp ='${timestamp}'`; |
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Old namespace doesn't have timestamp so this would cause error
| (LOWER(gene.gene_id)=LOWER('${geneProtein}') OR LOWER(gene.display_gene_id)=LOWER('${geneProtein}') | ||
| OR LOWER(protein.standard_name) =LOWER('${geneProtein}')) AND | ||
| LOWER(gene.gene_id) = LOWER(protein.gene_systematic_name);`; | ||
| ${namespace}.gene, ${namespace}.protein WHERE |
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Similar here, old namepsace doesn't have timestamp. Additionally, if we query from protein table, then we should check the timestamp from the protein table. If we query from gene table, then we should check the timestamp from the gene table.
…ry to only have timestamp query if timestamp is 2025 or later. need to fix query though since ZAP1 gene is not showing correct self-regulating expression
…constants.js, removed trailing spaces.
…ed constants to dbConstants, and now queries don't perform correctly
…ot currently using dbConstants file
ceciliazaragoza
changed the title
…s and protein-dals. correctly make query based on timestamp, need to check if add source to query
|
I verified the code is working |
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