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Sync Ontology/Reasoner/Manager, Ruff integration and more #62

Merged
merged 33 commits into from
Sep 4, 2024
Merged

Sync Ontology/Reasoner/Manager, Ruff integration and more #62

merged 33 commits into from
Sep 4, 2024

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alkidbaci
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@alkidbaci alkidbaci commented Aug 27, 2024 •
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  • OWLAPIAdaptor is disbanded. Its methods are now moved directly to SyncReasoner
  • SyncReasoner and SyncOntology can now be initialized directly using the path of the ontology (instead of the IRI)
  • Added SyncOntologyManager
  • Added SyncOntology
  • OWLAPIMapper now is initialize using SyncOntology
  • JPype start and stop functions added to owlapy/sync_functions.py
  • Added mapping for 'OntologyID' and 'Optional'
  • Added tests for SyncOntology and SyncReasoner
  • Add an remove axiom methods are moved to OWLOntology instead of OWLOntologyManager. This comes with parameters changes. Check the docstrings.
  • Added jgrapht java package, needed for pellet reasoning
  • Integrated Ruff for linting (added in the workflow for github actions)
  • Updated code based on failing linting tests.
  • Updated README and documentation.

alkidbaci added 30 commits August 20, 2024 13:26
@alkidbaci
changed OWLAPIMapper constructor
ef501ef
@alkidbaci
added JPype start and stop functions
0029053
@alkidbaci
added SyncOntologyManager and SyncOntology
847432a
@alkidbaci
OWLAPIAdaptor disbanded, logic moved to SyncReasoner
e8a9687
@alkidbaci
updated test to latest changes
35ecec0
@alkidbaci
SyncReasoner optional init using path
78d9aef
@alkidbaci
Updated test/examples using SyncReasoner
518ad88
@alkidbaci
Ontology can be loaded using path as string also
b0bf90c
@alkidbaci
Added mapping for 'OntologyID' and 'Optional'
f83f130
@alkidbaci
Implemented methods of SyncOntology
b2d18d8
@alkidbaci
fixed new ontology creation
9fe79f9
@alkidbaci
added test for sync ontology
8dbf219
@alkidbaci
add ruff workflow
790f68d
@alkidbaci
Updates based on ruff's linting report
417a114
@alkidbaci
Linting related changes
265f15f
@alkidbaci
Fixed converter and some of its tests
e826b10
@alkidbaci
updated path of ontology
b85448e
@alkidbaci
added tests for sync reasoner
2c31466
@alkidbaci
updated path
8529011
@alkidbaci
added jgrapht java package
10b27fe
@alkidbaci
updated data_property_domains test
94f6e71
@alkidbaci
Merge branch 'develop' into ruff-integration
f5fdc1a 
# Conflicts:
#	owlapy/__init__.py
#	owlapy/owl_ontology_manager.py
#	owlapy/owl_reasoner.py
#	owlapy/owlapi_mapper.py
@alkidbaci
set paths to relative
96f8c28
@alkidbaci
removed domain test
8adea84
@alkidbaci
fixed test
8ad0f48
@alkidbaci
moved add/remove axiom and save methods to Ontology class
6d9b483
@alkidbaci
updated references of add/remove axiom and save methods
9ef50ea
@alkidbaci
updated README
ed6ceb5
@alkidbaci
updated abstract and base classes
31ad8dd
@alkidbaci
updated documentation for owlapi synchronization
4ad2677
@alkidbaci alkidbaci merged commit d0abb5d into develop Sep 4, 2024
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@alkidbaci alkidbaci deleted the ruff-integration branch September 4, 2024 09:07
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