style: update ruff version

.pre-commit-config.yaml

@@ -7,7 +7,7 @@ repos:
       - id: trailing-whitespace
       - id: end-of-file-fixer
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.2.0
+    rev: v0.5.0  # ruff version
     hooks:
       - id: ruff-format
       - id: ruff

pyproject.toml

@@ -33,7 +33,7 @@ dynamic = ["version"]
 
 [project.optional-dependencies]
 tests = ["pytest", "pytest-cov", "pytest-benchmark", "requests_mock"]
-dev = ["pre-commit", "ruff==0.2.0"]
+dev = ["pre-commit", "ruff==0.5.0"]
 docs = [
     "sphinx==6.1.3",
     "sphinx-autodoc-typehints==1.22.0",
@@ -90,16 +90,22 @@ lint.select = [
     "DTZ",  # https://docs.astral.sh/ruff/rules/#flake8-datetimez-dtz
     "T10",  # https://docs.astral.sh/ruff/rules/#flake8-datetimez-dtz
     "EM",  # https://docs.astral.sh/ruff/rules/#flake8-errmsg-em
+    "LOG",  # https://docs.astral.sh/ruff/rules/#flake8-logging-log
     "G",  # https://docs.astral.sh/ruff/rules/#flake8-logging-format-g
+    "INP",  # https://docs.astral.sh/ruff/rules/#flake8-no-pep420-inp
     "PIE",  # https://docs.astral.sh/ruff/rules/#flake8-pie-pie
     "T20",  # https://docs.astral.sh/ruff/rules/#flake8-print-t20
     "PT",  # https://docs.astral.sh/ruff/rules/#flake8-pytest-style-pt
     "Q",  # https://docs.astral.sh/ruff/rules/#flake8-quotes-q
     "RSE",  # https://docs.astral.sh/ruff/rules/#flake8-raise-rse
     "RET",  # https://docs.astral.sh/ruff/rules/#flake8-return-ret
+    "SLF",  # https://docs.astral.sh/ruff/rules/#flake8-self-slf
     "SIM",  # https://docs.astral.sh/ruff/rules/#flake8-simplify-sim
+    "ARG",  # https://docs.astral.sh/ruff/rules/#flake8-unused-arguments-arg
     "PTH",  # https://docs.astral.sh/ruff/rules/#flake8-use-pathlib-pth
     "PGH",  # https://docs.astral.sh/ruff/rules/#pygrep-hooks-pgh
+    "PERF",  # https://docs.astral.sh/ruff/rules/#perflint-perf
+    "FURB",  # https://docs.astral.sh/ruff/rules/#refurb-furb
     "RUF",  # https://docs.astral.sh/ruff/rules/#ruff-specific-rules-ruf
 ]
 lint.fixable = [
@@ -110,16 +116,20 @@ lint.fixable = [
     "ANN",
     "B",
     "C4",
+    "LOG",
     "G",
     "PIE",
     "PT",
     "RSE",
     "SIM",
+    "PERF",
+    "FURB",
     "RUF"
 ]
 
-# ANN101 - missing-type-self
 # ANN003 - missing-type-kwargs
+# ANN101 - missing-type-self
+# ANN102 - missing-type-cls
 # D203 - one-blank-line-before-class
 # D205 - blank-line-after-summary
 # D206 - indent-with-spaces*
@@ -134,7 +144,7 @@ lint.fixable = [
 # W191 - tab-indentation*
 # *ignored for compatibility with formatter
 lint.ignore = [
-    "ANN101", "ANN003",
+    "ANN003", "ANN101", "ANN102",
     "D203", "D205", "D206", "D213", "D300", "D400", "D415",
     "E111", "E114", "E117", "E501",
     "W191",
@@ -150,4 +160,8 @@ lint.ignore = [
 # D103 - undocumented-public-function
 # S101 - assert
 # B011 - assert-false
-"tests/*" = ["ANN001", "ANN102", "ANN2", "S101", "B011", "D100", "D101", "D103"]
+# INP001 - implicit-namespace-package
+"tests/*" = ["ANN001", "ANN102", "ANN2", "S101", "B011", "D100", "D101", "D103", "INP001"]
+
+[tool.ruff.format]
+docstring-code-format = true

src/dgipy/dgidb.py

@@ -502,9 +502,10 @@ def __process_gene_search(results: dict) -> pd.DataFrame:
             approval_list.append(str(interaction["drug"]["approved"]))
             interactionscore_list.append(interaction["interactionScore"])
 
-            list_string = []
-            for attribute in interaction["interactionAttributes"]:
-                list_string.append(f"{attribute['name']}: {attribute['value']}")
+            list_string = [
+                f"{attribute['name']}: {attribute['value']}"
+                for attribute in interaction["interactionAttributes"]
+            ]
             interactionattributes_list.append(" | ".join(list_string))
 
             list_string = []
@@ -573,10 +574,10 @@ def __process_drug_search(results: dict) -> pd.DataFrame:
             interactionscore_list.append(interaction["interactionScore"])
             approval_list.append(current_approval)
 
-            list_string = []
-            for attribute in interaction["interactionAttributes"]:
-                list_string.append(f"{attribute['name']}: {attribute['value']}")
-
+            list_string = [
+                f"{attribute['name']}: {attribute['value']}"
+                for attribute in interaction["interactionAttributes"]
+            ]
             interactionattributes_list.append("| ".join(list_string))
 
             list_string = []