build(deps): bump jinja2 from 2.11.3 to 3.1.3 in /requirements #249
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| name: pytest | |
| # Run this workflow every time for pull requests and pushes to master and dev branch | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - dev | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| jobs: | |
| test-and-coverage: | |
| name: Test and Cov py ${{ matrix.python-version }}, ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 5 | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| activate-environment: minian | |
| environment-file: environment.yml | |
| - name: Install test dependencies | |
| run: | | |
| conda install -c conda-forge black==20.8b1 click==8.0.4 pytest==7.0.1 pytest-cov pytest-rerunfailures coverage==6.3.3 | |
| - name: Lint with black | |
| run: | | |
| black --check minian | |
| - name: Set up n_workers | |
| uses: haya14busa/action-cond@v1 | |
| id: n_workers | |
| with: | |
| cond: ${{ runner.os == 'macOS' }} | |
| if_true: 3 | |
| if_false: 2 | |
| - name: Run doctest | |
| run: | | |
| pip install -r requirements/requirements-doc.txt | |
| sphinx-build -M doctest docs/source docs/build | |
| - name: Run tests and collect coverage | |
| env: | |
| MINIAN_NWORKERS: ${{ steps.n_workers.outputs.value }} | |
| run: | | |
| pytest -v --color=yes --exitfirst --cov=minian --pyargs minian | |
| cp -r img artifact/img | |
| - name: Generate xml coverage report | |
| if: ${{ runner.os == 'Linux'}} | |
| run: | | |
| coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| if: ${{ runner.os == 'Linux'}} | |
| with: | |
| fail_ci_if_error: true | |
| - name: Set up conditional SHA value | |
| uses: haya14busa/action-cond@v1 | |
| id: commit_sha | |
| with: | |
| cond: ${{ github.event_name == 'pull_request' }} | |
| if_true: ${{ github.event.pull_request.head.sha }} | |
| if_false: ${{ github.sha }} | |
| - name: Upload notebook artifacts | |
| uses: actions/upload-artifact@v2 | |
| if: ${{ runner.os == 'Linux'}} | |
| with: | |
| name: notebooks-${{ steps.commit_sha.outputs.value }} | |
| path: artifact | |
| - name: Trigger RTDs build | |
| uses: dfm/rtds-action@v1 | |
| if: ${{ runner.os == 'Linux'}} | |
| with: | |
| webhook_url: ${{ secrets.RTDS_WEBHOOK_URL }} | |
| webhook_token: ${{ secrets.RTDS_WEBHOOK_TOKEN }} | |
| commit_ref: ${{ github.ref }} |