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feat: plain text model format #4025

Merged
merged 1 commit into from
Jul 26, 2024
Merged

feat: plain text model format #4025

merged 1 commit into from
Jul 26, 2024

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njzjz
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@njzjz njzjz commented Jul 25, 2024

Propose a plain text model format based on YAML, which humans can easily read and might be easier to track changes in the git repository (which is good for #2103).

Example: deeppot_dpa_sel.yaml

Summary by CodeRabbit

  • New Features

    • Added support for additional file formats (.yaml and .yml) for model saving and loading.
    • Enhanced the ability to serialize and deserialize model data in multiple formats.
  • Bug Fixes

    • Improved error handling for unsupported file formats during model loading.
  • Documentation

    • Updated documentation to reflect new supported file formats and clarify backend capabilities.
  • Tests

    • Introduced new test cases to ensure functionality for saving and loading models in YAML format.

Propose a plain text model format based on YAML, which can be easily read by humans and might be good to be stored in the git repository (which is good for deepmodeling#2103).

Signed-off-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
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coderabbitai bot commented Jul 25, 2024

Walkthrough

Walkthrough

The recent updates enhance the DPModelBackend to support additional file formats for model serialization and deserialization, specifically .yaml and .yml, alongside the existing .dp format. This modification improves the backend's versatility, enabling users to work with both binary and human-readable formats. The changes also include updates to documentation and testing to ensure comprehensive coverage of the new functionalities.

Changes

Files Change Summary
deepmd/backend/dpmodel.py Updated suffixes in DPModelBackend to include .yaml and .yml.
deepmd/dpmodel/utils/serialization.py Extended save_dp_model and load_dp_model functions to support YAML files with necessary conversions and error handling.
doc/backend.md Updated documentation to reflect support for .yaml and .yml formats, clarifying backend capabilities.
source/tests/common/dpmodel/test_network.py Added unit test test_save_load_model_yaml to verify saving and loading of models in YAML format.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Backend
    participant FileSystem

    User->>Backend: save_dp_model("model.yaml")
    Backend->>FileSystem: Check file extension (.yaml)
    alt Save as YAML
        Backend->>Backend: Convert model_dict to YAML
        Backend->>FileSystem: Write to model.yaml
    end
    User->>Backend: load_dp_model("model.yaml")
    Backend->>FileSystem: Read model.yaml
    Backend->>Backend: Parse YAML content
    Backend->>User: Return model_dict
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Actionable comments posted: 0

Outside diff range, codebase verification and nitpick comments (1)
doc/backend.md (1)

37-40: Minor grammatical improvement.

The explanation is clear, but it would be more grammatically correct to say "Only the Python inference interface can load these formats."

- Only Python inference interface can load these formats.
+ Only the Python inference interface can load these formats.
Tools
LanguageTool

[uncategorized] ~40-~40: You might be missing the article “the” here.
Context: ... is easy to read for human beings. Only Python inference interface can load these form...

(AI_EN_LECTOR_MISSING_DETERMINER_THE)

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codecov bot commented Jul 25, 2024

Codecov Report

Attention: Patch coverage is 91.17647% with 3 lines in your changes missing coverage. Please review.

Project coverage is 82.93%. Comparing base (5dd0062) to head (81d1b1b).

Files Patch % Lines
deepmd/dpmodel/utils/serialization.py 90.90% 3 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##            devel    #4025   +/-   ##
=======================================
  Coverage   82.92%   82.93%           
=======================================
  Files         522      522           
  Lines       51010    51036   +26     
  Branches     3023     3023           
=======================================
+ Hits        42301    42325   +24     
- Misses       7767     7770    +3     
+ Partials      942      941    -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@iProzd iProzd added this pull request to the merge queue Jul 26, 2024
Merged via the queue into deepmodeling:devel with commit 7f61048 Jul 26, 2024
60 checks passed
mtaillefumier pushed a commit to mtaillefumier/deepmd-kit that referenced this pull request Sep 18, 2024
Propose a plain text model format based on YAML, which humans can easily
read and might be easier to track changes in the git repository (which
is good for deepmodeling#2103).

Example:
[deeppot_dpa_sel.yaml](https://github.com/user-attachments/files/16384230/deeppot_dpa_sel.yaml.txt)


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **New Features**
- Added support for additional file formats (.yaml and .yml) for model
saving and loading.
- Enhanced the ability to serialize and deserialize model data in
multiple formats.

- **Bug Fixes**
- Improved error handling for unsupported file formats during model
loading.

- **Documentation**
- Updated documentation to reflect new supported file formats and
clarify backend capabilities.

- **Tests**
- Introduced new test cases to ensure functionality for saving and
loading models in YAML format.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Signed-off-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
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3 participants