NCBI Gene RDF

Original data

NCBI Gene

• Data provider
  • National Center for Biotechnology Information
• License
  • https://www.ncbi.nlm.nih.gov/home/about/policies/
• Download
  • ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz

Created RDF

$ ./bin/ncbigene_rdf.pl gene_info

Creator

• Hirokazu Chiba

RDF config

• https://github.com/dbcls/rdf-config/tree/master/config/ncbigene

Schema

• https://raw.githubusercontent.com/dbcls/rdf-config/master/config/ncbigene/schema.svg

Metadata

• https://github.com/dbcls/rdf-config/blob/master/config/ncbigene/metadata.yaml
• https://github.com/dbcls/rdf-config/blob/master/config/ncbigene/metadata_ja.yaml

SPARQL

• gene_info.rq
• gene_types.rq

Ontology

Ontology for NCBI Gene

• https://dbcls.github.io/ncbigene-rdf/ontology.ttl (GitHub Pages)