jPOST

jPOST project

Member

• Shujiro Okuda
• Yu Watanabe
• Yuki Moriya
• Shin Kawano
• Akiyasu Yoshizawa
• Satoshi Tanaka
• Susumu Goto

Summary

• Repository admin mode (Yu Watanabe) (Day 3)
• Database interface (Yuki Moriya) -- developed interfaces (ppt)
• Proteogenomics: Possibility of using IGV for BAM, ProBAM and ProBED.
• Glycoproteomics: Discussed with glycome info group about integrating ms data repositories (Day 1)

Side tasks related to KEGG

• KEGG DRUG & DISEASE RDF
• diesase-gene, disease-drug, drug-target informaion for disease-gene network machine learning
• KEGG GLYCAN related collaboration with glycome info group

Day 1

• Discussed GlyComb development integrating GlyTouCan and jPOST

Day 2

• Discussed dataset filtering interface and filtered dataset comparing interface
• Made a poster for the HUPO conference next week!　（Project leader said, we need one more poster, on this monday suddenly)

Day 3

• Develop a web interface for admin page to show statistics of data and users. (Yu Watanabe)
• Develop a TogoStanza to map the quantitative values of proteins to the KEGG Pathway map: underway (Yuki Moriya)

Day 4

• Discuss proteogenomics interface for the jPOST database
• Possibility using IVG for BAM and proBAM/proBED
• Discuss missing protein search
• developed interfaces (ppt)

Day 5

• Visualization of multi-protein test
• Leave for the HUPO conference in Dublin
• Print posters at DBCLS