Construct ragged arrays as dtype=object in srm. #58
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| on: | |
| pull_request: | |
| push: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pypi: | |
| env: | |
| IGNORE_CONDA: true | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| fail-fast: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: mpi4py/setup-mpi@v1 | |
| - run: | | |
| python3 -m pip install -U pip | |
| - if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: | | |
| ./pr-check.sh | |
| - if: ${{ contains(matrix.os, 'macos') }} | |
| run: | | |
| brew install libomp llvm | |
| export CLANG_PREFIX=$(brew --prefix llvm) | |
| export CC=$CLANG_PREFIX/bin/clang | |
| export CXX=$CLANG_PREFIX/bin/clang++ | |
| ./pr-check.sh | |
| # - uses: codecov/codecov-action@v1 | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-13, macos-14] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Used to host cibuildwheel | |
| - uses: actions/setup-python@v5 | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel==2.19.0 | |
| - name: Build wheels | |
| run: python -m cibuildwheel --output-dir wheelhouse | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }} | |
| path: ./wheelhouse/*.whl | |
| conda: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ['3.9', '3.10', '3.11'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - if: ${{ contains(matrix.os, 'macos') }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| - name: Setup micromamba and boa | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: test-env | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| boa | |
| - name: Build and test package | |
| id: build-package | |
| run: | | |
| export CONDA_HOME=$CONDA | |
| conda install conda-build | |
| out_dir="${{ matrix.os }}-build" | |
| .conda/bin/build ${{ matrix.python-version }} $out_dir | |
| echo "PACKAGE_PATH=${out_dir}" >> "$GITHUB_OUTPUT" | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: ${{ steps.build-package.outputs.PACKAGE_PATH }} | |
| publish_conda: | |
| needs: [conda, pypi] | |
| name: Publish to Anaconda | |
| environment: anaconda | |
| permissions: | |
| id-token: write | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && contains(github.ref, 'refs/tags/v') | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: ${{ steps.build-package.outputs.PACKAGE_PATH }} | |
| - name: List files in artifact | |
| run: find ${{ steps.build-package.outputs.PACKAGE_PATH }} -type f -name "*.tar.bz2" | |
| - name: Upload to Anaconda | |
| run: | | |
| export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_TOKEN }} | |
| find ${{ steps.build-package.outputs.PACKAGE_PATH }} -type f -name "*.tar.bz2" -exec echo "anaconda upload {}" \; | |
| dist: | |
| name: Distribution build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: hynek/build-and-inspect-python-package@v1 | |
| publish_pypi: | |
| name: Publish to PyPI | |
| needs: [dist, pypi, conda] | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/brainiak | |
| permissions: | |
| id-token: write | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && contains(github.ref, 'refs/tags/v') | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: Packages | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 |