You can find more information about MoSeq Pipeline, installation, step-by-step instructions, documentation for Command Line Interface(CLI), tutorials etc in MoSeq2 Wiki.
You can run moseq2-extract --version to check the current version and moseq2-extract --help to see all the commands.
Usage: moseq2-extract [OPTIONS] COMMAND [ARGS]...
Options:
--version Show the version and exit. [default: False]
--help Show this message and exit. [default: False]
Commands:
aggregate-results Copies all extracted results (h5, yaml, avi) files...
batch-extract Batch processes all the raw depth recordings located...
convert-raw-to-avi Converts/Compresses a raw depth file into an avi file...
copy-slice Copies a segment of an input depth recording into a...
download-flip-file Downloads Flip-correction model that helps with...
extract Processes raw input depth recordings to output a...
find-roi Finds the ROI and background distance to subtract
from...
generate-config Generates a configuration file that holds editable...
generate-index Generates an index YAML file containing all extracted...- Please join
to post questions and interactive with MoSeq developers and users.
- If you encounter bugs, errors or issues, please submit a Bug report here. We encourage you to check out the troubleshooting and tips section and search your issues in the existing issues first.
- If you want to see certain features in MoSeq or you have new ideas, please submit a Feature request here.
- If you want to contribute to our codebases, please check out our Developer Guidelines.
- Please tell us what you think by filling out this user survey.
MoSeq is freely available for academic use under a license provided by Harvard University. Please refer to the license file for details. If you are interested in using MoSeq for commercial purposes please contact Bob Datta directly at srdatta@hms.harvard.edu, who will put you in touch with the appropriate people in the Harvard Technology Transfer office.