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@datajoint

DataJoint

Open-source tools for computational data pipelines.
README.md

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 172 85

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 10 125

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 35

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 9 43

Repositories

Showing 10 of 90 repositories
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 0 5 1 0 Updated Jan 2, 2025
  • manual-letsencrypt Public Forked from guzman-raphael/manual-letsencrypt
    datajoint/manual-letsencrypt’s past year of commit activity
    HCL 0 3 0 0 Updated Jan 2, 2025
  • .github Public

    Organizational default configs for @datajoint repos

    datajoint/.github’s past year of commit activity
    0 MIT 4 0 0 Updated Jan 2, 2025
  • datajoint-docs Public

    Landing Page for DataJoint Documentation

    datajoint/datajoint-docs’s past year of commit activity
    CSS 4 MIT 11 2 0 Updated Dec 12, 2024
  • pharus Public

    Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

    datajoint/pharus’s past year of commit activity
    Python 3 MIT 16 16 (2 issues need help) 1 Updated Nov 15, 2024
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 35 26 (2 issues need help) 1 Updated Nov 4, 2024
  • element-event Public

    DataJoint Element for event-based behavior experiments

    datajoint/element-event’s past year of commit activity
    Python 0 MIT 18 3 0 Updated Oct 25, 2024
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 172 LGPL-2.1 85 126 4 Updated Oct 11, 2024
  • element-interface Public

    Common functions for the DataJoint Elements

    datajoint/element-interface’s past year of commit activity
    Python 3 MIT 17 9 (1 issue needs help) 2 Updated Oct 1, 2024
  • element-optogenetics Public

    DataJoint Element for optogenetic experiments

    datajoint/element-optogenetics’s past year of commit activity
    Jupyter Notebook 0 MIT 8 0 0 Updated Oct 1, 2024
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