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Add calibration calculators #2609

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Add calibration calculators #2609

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Commits on Apr 29, 2024

  1. added stats extractor parent component 

    added PlainExtractor based on numpy and scipy functions
    Tjark Miener authored and Tjark Miener committed Apr 29, 2024
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  2. added stats extractor based on sigma clipping

    Tjark Miener authored and Tjark Miener committed Apr 29, 2024
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Commits on Apr 30, 2024

  1. added cut of outliers 

    restructured the stats containers
    Tjark Miener authored and Tjark Miener committed Apr 30, 2024
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Commits on May 2, 2024

  1. update docs

    Tjark Miener committed May 2, 2024
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  2. formatted with black

    Tjark Miener committed May 2, 2024
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  3. added pass for __call__ function

    Tjark Miener committed May 2, 2024
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Commits on May 3, 2024

  1. added unit tests

    Tjark Miener authored and Tjark Miener committed May 3, 2024
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  2. added changelog

    Tjark Miener authored and Tjark Miener committed May 3, 2024
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  3. fix lint

    Tjark Miener authored and Tjark Miener committed May 3, 2024
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Commits on May 7, 2024

  1. Small commit for prototyping

    Christoph Toennis committed May 7, 2024
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Commits on May 10, 2024

  1. Removed unneeded functions

    Christoph Toennis committed May 10, 2024
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Commits on May 23, 2024

  1. Merge branch 'stats_extractor' of https://github.com/cta-observatory/… 

    …ctapipe into stats_extractor
    Christoph Toennis committed May 23, 2024
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  2. I altered the class variables to th evariance statistics extractor

    Christoph Toennis committed May 23, 2024
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Commits on May 24, 2024

  1. added a container for mean variance images and fixed docustring

    Christoph Toennis committed May 24, 2024
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Commits on May 27, 2024

  1. I changed the container type for the StarVarianceExtractor

    Christoph Toennis committed May 27, 2024
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Commits on May 31, 2024

  1. fix pylint 

    Remove StarVarianceExtractor since is functionality is featured in the existing Extractors
    Tjark Miener authored and Tjark Miener committed May 31, 2024
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  2. change __call__() to _extract()

    Tjark Miener authored and Tjark Miener committed May 31, 2024
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  3. minor renaming

    Tjark Miener authored and Tjark Miener committed May 31, 2024
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  4. use pytest.fixture for Extractors

    Tjark Miener authored and Tjark Miener committed May 31, 2024
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  5. reduce duplicated code of the call function

    Tjark Miener authored and Tjark Miener committed May 31, 2024
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Commits on Jun 12, 2024

  1. edit description of StatisticsContainer

    @TjarkMiener
    TjarkMiener committed Jun 12, 2024
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  2. added feature to shift the extraction sequence 

    allow overlapping extraction sequences
    @TjarkMiener
    TjarkMiener committed Jun 12, 2024
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  3. fix boundary case for the last chunk 

    renaming to chunk(s) and chunk_size and _shift

added test for chunk_shift and boundary case
    @TjarkMiener
    TjarkMiener committed Jun 12, 2024
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  4. I made prototypes for the CalibrationCalculators

    Christoph Toennis committed Jun 12, 2024
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  5. I made PSFModel a generic class

    Christoph Toennis committed Jun 12, 2024
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  6. fix tests

    @TjarkMiener
    TjarkMiener committed Jun 12, 2024
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  7. fix ruff

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    TjarkMiener committed Jun 12, 2024
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  8. I fixed some variable names

    Christoph Toennis committed Jun 12, 2024
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Commits on Jun 13, 2024

  1. Added a method for calibrating variance images

    Christoph Toennis committed Jun 13, 2024
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  2. Merge branch 'stats_extractor' into CalibrationCalculators

    Christoph Toennis committed Jun 13, 2024
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Commits on Jun 14, 2024

  1. Commit before push for tjark

    Christoph Toennis committed Jun 14, 2024
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Commits on Jun 28, 2024

  1. added StatisticsCalculator

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    TjarkMiener committed Jun 28, 2024
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Commits on Jul 5, 2024

  1. make faulty_pixels_threshold and chunk_shift as traits 

    rename stats calculator to TwoPass...
    @TjarkMiener
    TjarkMiener committed Jul 5, 2024
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Commits on Aug 7, 2024

  1. added stats extractor parent component 

    added PlainExtractor based on numpy and scipy functions
    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  2. added stats extractor based on sigma clipping

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  3. added cut of outliers 

    restructured the stats containers
    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  4. update docs

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  5. formatted with black

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  6. added pass for __call__ function

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  7. Small commit for prototyping

    Christoph Toennis committed Aug 7, 2024
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  8. Removed unneeded functions

    Christoph Toennis committed Aug 7, 2024
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  9. added unit tests

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  10. added changelog

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  11. fix lint

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  12. I altered the class variables to th evariance statistics extractor

    Christoph Toennis committed Aug 7, 2024
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  13. added a container for mean variance images and fixed docustring

    Christoph Toennis committed Aug 7, 2024
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  14. I changed the container type for the StarVarianceExtractor

    Christoph Toennis committed Aug 7, 2024
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  15. fix pylint 

    Remove StarVarianceExtractor since is functionality is featured in the existing Extractors
    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  16. change __call__() to _extract()

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  17. minor renaming

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  18. use pytest.fixture for Extractors

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  19. reduce duplicated code of the call function

    Tjark Miener authored and Christoph Toennis committed Aug 7, 2024
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  20. I made prototypes for the CalibrationCalculators

    Christoph Toennis committed Aug 7, 2024
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  21. I made PSFModel a generic class

    Christoph Toennis committed Aug 7, 2024
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  22. I fixed some variable names

    Christoph Toennis committed Aug 7, 2024
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  23. Added a method for calibrating variance images

    Christoph Toennis committed Aug 7, 2024
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  24. edit description of StatisticsContainer

    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  25. added feature to shift the extraction sequence 

    allow overlapping extraction sequences
    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  26. fix boundary case for the last chunk 

    renaming to chunk(s) and chunk_size and _shift

added test for chunk_shift and boundary case
    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  27. fix tests

    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  28. fix ruff

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    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  29. Commit before push for tjark

    Christoph Toennis committed Aug 7, 2024
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  30. added StatisticsCalculator

    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  31. make faulty_pixels_threshold and chunk_shift as traits 

    rename stats calculator to TwoPass...
    @TjarkMiener
    TjarkMiener authored and Christoph Toennis committed Aug 7, 2024
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  32. Merge branch 'CalibrationCalculators' of https://github.com/cta-obser… 

    …vatory/ctapipe into CalibrationCalculators
    Christoph Toennis committed Aug 7, 2024
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  33. solved merge conflicts

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    TjarkMiener committed Aug 7, 2024
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  34. I made prototypes for the CalibrationCalculators

    @TjarkMiener
    Christoph Toennis authored and TjarkMiener committed Aug 7, 2024
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  35. I made PSFModel a generic class

    @TjarkMiener
    Christoph Toennis authored and TjarkMiener committed Aug 7, 2024
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  36. I fixed some variable names

    @TjarkMiener
    Christoph Toennis authored and TjarkMiener committed Aug 7, 2024
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  37. Added a method for calibrating variance images

    @TjarkMiener
    Christoph Toennis authored and TjarkMiener committed Aug 7, 2024
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  38. Commit before push for tjark

    @TjarkMiener
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  39. added StatisticsCalculator

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  40. make faulty_pixels_threshold and chunk_shift as traits 

    rename stats calculator to TwoPass...
    @TjarkMiener
    TjarkMiener committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. adding interpolator and Merge branch 'CalibrationCalculators' of http… 

    …s://github.com/cta-observatory/ctapipe into CalibrationCalculators
    Christoph Toennis committed Aug 8, 2024
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Commits on Aug 20, 2024

  1. Removed Pointing Calculator

    Christoph Toennis committed Aug 20, 2024
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  2. Removing PointingCalculator, PSF model and interpolators

    Christoph Toennis committed Aug 20, 2024
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Commits on Aug 23, 2024

  1. implement the StatisticsCalculator

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    TjarkMiener committed Aug 23, 2024
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Commits on Aug 24, 2024

  1. removed the helper function to get the start and end slices 

    Since agregation is chunk has always the same n_events, we can simplify the retrieving of the start and end slices. Therefore we do not need a helper function anymore
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    TjarkMiener committed Aug 24, 2024
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Commits on Aug 25, 2024

  1. polish docstrings

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    TjarkMiener committed Aug 25, 2024
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  2. further polishing of docstrings

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    TjarkMiener committed Aug 25, 2024
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  3. fix typo

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    TjarkMiener committed Aug 25, 2024
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  4. move check of config settings before loading of data

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    TjarkMiener committed Aug 25, 2024
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  5. moved Interpolator outside 

    This branch should only host the devs for the stats calculator
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  6. removed Interpolator artifacts

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    TjarkMiener committed Aug 25, 2024
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  7. removed reading part with TableLoader 

    reading should be done in the tool outside of this component
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  8. removed writing part 

    writing should be also done in the tool outside of this component
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Commits on Aug 26, 2024

  1. add unit tests for calculators

    @TjarkMiener
    TjarkMiener committed Aug 26, 2024
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  2. add unit tests for calculators

    @TjarkMiener
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  3. split __call__ function into two function for the first and second pass 

    second pass also has an argument to pass the list of faulty/valid chunks which can be a logical_and from multiple first passes
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    TjarkMiener committed Aug 26, 2024
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  4. fix docs and add changelog

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Commits on Aug 27, 2024

  1. removed check for any faulty chunk 

    check should be done before and then the second pass should not be called if only valid chunks are provided
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  2. removed base class CalibrationCalculator and only have one Statistics… 

    …Calculator class
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Commits on Aug 28, 2024

  1. fix fstring in logging

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    TjarkMiener committed Aug 28, 2024
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  2. bug fix 

    aggregated stats of the second pass we simply overwritten rather than append and vstacked()

unit tests are improved to properly test for the correct number of chunks
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  3. removed print

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    TjarkMiener committed Aug 28, 2024
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Commits on Sep 3, 2024

  1. removed me from CODEOWNERS

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Commits on Sep 23, 2024

  1. Merge branch 'main' into CalibrationCalculators

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Commits on Oct 8, 2024

  1. renamed to PixelStatisticsCalculator

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Commits on Oct 15, 2024

  1. remove option to pass stats aggregator in constructor

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  2. rename n_pix to n_pixels

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  3. factored out _find_outliers()

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  4. use fraction instead of percentage for faulty_pixels_threshold

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    TjarkMiener committed Oct 15, 2024
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  5. combine outlier mask for two gains in a more readable way

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    TjarkMiener committed Oct 15, 2024
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  6. update tests to set everything from the config

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  7. remove redundant import

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    TjarkMiener committed Oct 15, 2024
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  8. use np.flatnonzero instead of np.where

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    TjarkMiener committed Oct 15, 2024
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  9. polish docstrings

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    TjarkMiener committed Oct 15, 2024
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  10. also store the outlier mask for each detector

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    TjarkMiener committed Oct 15, 2024
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  11. fix ruff formatting

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    TjarkMiener committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. validate outlier_detector_list trait

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    TjarkMiener committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. rename faulty_pixels_threshold to faulty_pixels_fraction 

    polish doctrings for trait help
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    TjarkMiener committed Oct 17, 2024
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