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pangolin v4.0.3
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@aineniamh aineniamh released this 07 Apr 13:20
· 82 commits to master since this release
v4.0.3
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Learn about vigilant mode.

Release notes

Updates include

  • Run git-lfs install before pangolin-assignment installation (resolves issue #403)
  • Ignore cache row is lineage is unassigned (resolves issue #410).
  • Failed to map sequences found again, resolves issue #409
  • Updating CLI help message for analysis mode to make clearer as suggested by #396
  • As suggested in #412, scorpio-only mode introduced (docs updated at https://cov-lineages.org/resources/pangolin/usage.html). version field in the output file in this mode now indicates scorpio mode was used and the number corresponds to the version of constellations used in the assignment, e.g. SCORPIO_v0.1.4 instead of PUSHER_v1.2.333 or PLEARN_v1.2.333
  • Adding in cleanup step for issue #401
  • Adding in --max-ambig and --min-length logic flagged in issue #405
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