b1351 patch for slineages

cov-lineages · Mar 23, 2021 · c55e988 · c55e988
1 parent f814f4b
commit c55e988
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pangolin/__init__.py b/pangolin/__init__.py
@@ -1,2 +1,2 @@
 _program = "pangolin"
-__version__ = "2.3.4"
+__version__ = "2.3.5"
diff --git a/pangolin/scripts/pangolearn.smk b/pangolin/scripts/pangolearn.smk
@@ -295,15 +295,15 @@ rule overwrite:
                         new_row["lineage"] = "B.1.1.7"
 
                         writer.writerow(new_row)
-                    elif row["lineage"] =="B.1.351" and row["taxon"] not in b1351:
+                    elif row["lineage"].startswith("B.1.351") and row["taxon"] not in b1351:
                         new_row = row
 
                         new_row["probability"] = "1.0"
                         new_row["lineage"] = "B.1"
 
                         writer.writerow(new_row)
 
-                    elif row["taxon"] in b1351 and not row["lineage"].startswith("B.1.351."):
+                    elif row["taxon"] in b1351:
                         new_row = row
 
                         snps = b1351[row["taxon"]]