CI: Updated the list of outputs for all tests except for fmri (tests …

…7 and 8)
connectomicslab · Mar 4, 2021 · 9204cb3 · 9204cb3
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diff --git a/.circleci/tests/expected_outputs/ds-sample_test-01_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-01_outputs.txt
diff --git a/.circleci/tests/expected_outputs/ds-sample_test-02_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-02_outputs.txt
diff --git a/.circleci/tests/expected_outputs/ds-sample_test-03_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-03_outputs.txt
diff --git a/.circleci/tests/expected_outputs/ds-sample_test-04_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-04_outputs.txt
diff --git a/.circleci/tests/expected_outputs/ds-sample_test-05-simg_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-05-simg_outputs.txt
@@ -1,4 +1,8 @@
 cmp/dataset_description.json
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aparcaseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_mask.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_T1w.nii.gz
@@ -8,10 +12,6 @@ cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-head_T1w.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-brain_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-GM_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_dseg.nii.gz

diff --git a/.circleci/tests/expected_outputs/ds-sample_test-05_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-05_outputs.txt
@@ -1,4 +1,8 @@
 cmp/dataset_description.json
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aparcaseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_mask.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_T1w.nii.gz
@@ -8,10 +12,6 @@ cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-head_T1w.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-brain_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-GM_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_dseg.nii.gz

diff --git a/.circleci/tests/expected_outputs/ds-sample_test-06-simg_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-06-simg_outputs.txt
@@ -1,4 +1,28 @@
 cmp/dataset_description.json
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aparcaseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_mask.nii.gz
@@ -9,31 +33,7 @@ cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-head_T1w.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-brain_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-GM_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_dseg.nii.gz
 cmp/sub-01/ses-01/sub-01_ses-01_anatomical_config.json

diff --git a/.circleci/tests/expected_outputs/ds-sample_test-06_outputs.txt b/.circleci/tests/expected_outputs/ds-sample_test-06_outputs.txt
@@ -1,4 +1,28 @@
 cmp/dataset_description.json
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-Desikan_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale1_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale2_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale3_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale4_stats.tsv
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_dseg.graphml
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_dseg.nii.gz
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_FreeSurferColorLUT.txt
+cmp/sub-01/ses-01/anat/sub-01_ses-01_atlas-L2008_res-scale5_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aparcaseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-aseg_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-brain_mask.nii.gz
@@ -9,31 +33,7 @@ cmp/sub-01/ses-01/anat/sub-01_ses-01_desc-head_T1w.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-brain_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-CSF_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-Desikan_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-GM_dseg.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale1_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale2_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale3_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale4_stats.tsv
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas_FreeSurferColorLUT.txt
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas.graphml
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_atlas.nii.gz
-cmp/sub-01/ses-01/anat/sub-01_ses-01_label-L2008_desc-scale5_stats.tsv
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_desc-eroded_dseg.nii.gz
 cmp/sub-01/ses-01/anat/sub-01_ses-01_label-WM_dseg.nii.gz
 cmp/sub-01/ses-01/sub-01_ses-01_anatomical_config.json