pin scipy to < 1.14, see https://github.com/openmm/openmm/issues/4601

[mikemhenry]

Checklist

• Used a personal fork of the feedstock to propose changes
• Bumped the build number (if the version is unchanged)
• Reset the build number to 0 (if the version changed)
• Re-rendered with the latest conda-smithy (Use the phrase @conda-forge-admin, please rerender in a comment in this PR for automated rerendering)
• Ensured the license file is being packaged.

[mikemhenry]

@conda-forge-admin, please rerender

[conda-forge-webservices]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe/meta.yaml) and found it was in an excellent condition.

[mikemhenry]

Not sure what is going on with the failures, they fail to import openmm,

ModuleNotFoundError: No module named 'openmm'

In the build log, this also shows up:

Traceback (most recent call last):
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/work/build/python/setup.py", line 276, in <module>
    main()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/work/build/python/setup.py", line 273, in main
    setup(**setupKeywords)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/__init__.py", line 108, in setup
    return distutils.core.setup(**attrs)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/core.py", line 184, in setup
    return run_commands(dist)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
    dist.run_commands()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/dist.py", line 964, in run_commands
    self.run_command(cmd)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/dist.py", line 945, in run_command
    super().run_command(command)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
    cmd_obj.run()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/command/install.py", line 86, in run
    return super().run()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/install.py", line 694, in run
    self.run_command('build')
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
    self.distribution.run_command(command)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/dist.py", line 945, in run_command
    super().run_command(command)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
    cmd_obj.run()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
    self.distribution.run_command(command)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/dist.py", line 945, in run_command
    super().run_command(command)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
    cmd_obj.run()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/command/build_ext.py", line 93, in run
    _build_ext.run(self)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 359, in run
    self.build_extensions()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 476, in build_extensions
    self._build_extensions_serial()
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 502, in _build_extensions_serial
    self.build_extension(ext)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/command/build_ext.py", line 254, in build_extension
    _build_ext.build_extension(self, ext)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/Cython/Distutils/build_ext.py", line 135, in build_extension
    super(build_ext, self).build_extension(ext)
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 581, in build_extension
    self.compiler.link_shared_object(
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/ccompiler.py", line 757, in link_shared_object
    self.link(
  File "/home/conda/feedstock_root/build_artifacts/openmm_1724181143600/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/pypy3.9/site-packages/setuptools/_distutils/unixccompiler.py", line 268, in link
    linker = (
TypeError: 'NoneType' object is not subscriptable (key slice(None, None, None))

But does not show up in the passing builds

[peastman]

It's not a very helpful error message. My best guess is that one of the entries in setupKeywords at line 273 of setup.py is None, or something else invalid. Can you patch it to print out the value?

[peastman]

I just got the same error from CI at openmm/openmm#4622, but only for the Pypy build.

[peastman]

The inputs to setup() look fine. I think this is the line in unixcompiler.py that's throwing the exception.

linker = (self.linker_exe if building_exe else self.linker_so)[:]

This looks like something in the compiler stack has changed recently and broken.

[mikemhenry]

@conda-forge-admin, please rerender

[mikemhenry]

Sweet looks like it worked! any objects to merging @peastman ? after it gets merged in I'll make a repometadata patch to update the older builds with this pin.

[peastman]

Looks good!