Code

v2.12.1#739

Code

Merged

joshua-d-campbell merged 41 commits intocompbiomed:mastercompbiomed/singleCellTK:masterfrom joshua-d-campbell:masterjoshua-d-campbell/singleCellTK:masterCopy head branch name to clipboardJan 11, 2024

+2,825-6,532

Commits

Commits on Sep 21, 2023

• Merge pull request compbiomed#42 from compbiomed/devel

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  salzcamino

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Commits on Sep 24, 2023

• Pulled from origin devel to allow for successful merge

  

  Akshay Aravind

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Commits on Oct 2, 2023

• Added scaling implementation in bubbleplot and implemented GUI changes for BubblePlot

  

  Akshay Aravind

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Commits on Oct 7, 2023

• Fixed normalization function to return back into tempSCE, and updated function documentation

  

  Akshay Aravind

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Commits on Oct 19, 2023

• Add start to runTSCAN, fix feature reducedDim error in plotSeuratGenes

  salzcamino

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• Merge pull request compbiomed#43 from compbiomed/devel

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  salzcamino

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Commits on Oct 29, 2023

• Updated Harmony documentation

  irzamsarfraz

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Commits on Nov 1, 2023

• Merge pull request compbiomed#728 from salzcamino/master

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  joshua-d-campbell

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• Merge pull request compbiomed#729 from irzamsarfraz/devel

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  joshua-d-campbell

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Commits on Nov 30, 2023

• added support for importing SCE by loose file

  liuming1997

  committed
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• Merge branch 'devel' of github.com:mingl1997/singleCellTK into devel

  liuming1997

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• Merge pull request compbiomed#18 from compbiomed/devel

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  mingl1997

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Commits on Dec 12, 2023

• fix for importCellRangerV3 to handle subdirectory

  liuming1997

  committed
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• Merge branch 'devel' of github.com:mingl1997/singleCellTK into devel

  liuming1997

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Commits on Dec 22, 2023

• Merge remote-tracking branch 'origin/devel'

  akshayarav

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Commits on Dec 23, 2023

• Modified .ggBubble to set gene/feature names vertically

  akshayarav

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• Change Cluster to Select Annotation for bubbleplot GUI

  akshayarav

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Commits on Jan 3, 2024

• Finish Bubbleplot GUI

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  akshayarav

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Commits on Jan 5, 2024

• Merge branch 'master' into devel

  joshua-d-campbell

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• Merge pull request compbiomed#730 from mingl1997/devel

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  joshua-d-campbell

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• Merge pull request compbiomed#717 from akshayarav/devel

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  joshua-d-campbell

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• Merge pull request compbiomed#19 from compbiomed/devel

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  mingl1997

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• fixed documentation error and updated the looseFile flag to flatFile

  liuming1997

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Commits on Jan 8, 2024

• fixed bubble plot and added optparse check

  liuming1997

  committed
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• fixed documentation error associated with setting seed

  liuming1997

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• pointed SCTK to latest stable release

  mingl1997

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• Update Dockerfile

  mingl1997

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Commits on Jan 9, 2024

• Merge pull request compbiomed#44 from compbiomed/master

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  salzcamino

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• Merge pull request compbiomed#45 from compbiomed/devel

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  salzcamino

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• update plotSeuratGenes args

  salzcamino

  committed
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• documentation

  salzcamino

  committed
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• add namespace for element_text

  salzcamino

  committed
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• Merge pull request compbiomed#735 from mingl1997/devel

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  joshua-d-campbell

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• edited Dockerfile to point to master repo

  liuming1997

  committed
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• Merge pull request compbiomed#20 from compbiomed/devel

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  mingl1997

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• resolve conflicts

  salzcamino

  committed
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• git push origin masterMerge branch 'compbiomed-devel'

  salzcamino

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Commits on Jan 10, 2024

• Merge pull request compbiomed#737 from mingl1997/devel

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  joshua-d-campbell

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• Merge pull request compbiomed#738 from salzcamino/master

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  joshua-d-campbell

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• updated NEWS and version bump

  joshua-d-campbell

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Commits on Jan 11, 2024

• Updated docs for v2.12.1

  joshua-d-campbell

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