Containerize missing tools/update #140

	# action to build the gwas Docker image at each commit without pushing it
	name: build gwas Docker image

	on:
	pull_request:
	branches:
	- 'main'
	push:
	branches:
	- 'main'
	tags:
	- "v..*"

	env:
	LATEST_TAG: ghcr.io/comorment/gwas:latest

	jobs:
	docker:
	runs-on: ubuntu-latest
	steps:
	-
	name: Checkout repository
	uses: actions/checkout@v4
	with:
	lfs: 'true'
	sparse-checkout: \|
	test-requirements.txt
	tests
	-
	name: Docker meta
	id: meta
	uses: docker/metadata-action@v5
	with:
	images: \|
	ghcr.io/${{ github.repository_owner }}/gwas
	tags: \|
	type=ref,event=branch
	type=semver,pattern={{version}}
	type=sha
	type=raw,value=latest,enable={{is_default_branch}}
	-
	name: Set up QEMU
	uses: docker/setup-qemu-action@v3
	-
	name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v3
	-
	name: Login to GitHub Container Registry
	if: github.event_name != 'pull_request'
	uses: docker/login-action@v3
	with:
	registry: ghcr.io
	username: ${{ github.repository_owner }}
	password: ${{ secrets.GITHUB_TOKEN }}
	-
	name: Build and export to Docker
	uses: docker/build-push-action@v6
	with:
	context: "{{defaultContext}}:docker"
	load: true
	tags: ${{ env.LATEST_TAG }}
	file:
	./dockerfiles/gwas/Dockerfile
	-
	name: Test
	run: \|
	git lfs pull -I tests/extras/*.tar.gz
	pip3 install -r test-requirements.txt
	py.test -v tests/test_gwas.py
	-
	name: Build and push
	uses: docker/build-push-action@v6
	with:
	context: "{{defaultContext}}:docker"
	push: False
	tags: ${{ steps.meta.outputs.tags }}
	file:
	./dockerfiles/gwas/Dockerfile
	platforms: linux/amd64

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