Tool registries

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Julian Pistorius edited this page May 14, 2020 · 12 revisions

Dockstore

http://dockstore.org

Agora

https://github.com/broadinstitute/agora/

BioShadock

https://docker-ui.genouest.org

Elixir Registry

http://bio.tools

Omictools

http://omictools.com/

Galaxy Toolshed

https://toolshed.g2.bx.psu.edu/

My Experiment

http://www.myexperiment.org/

Synapse

https://www.synapse.org/

BioCatalogue

https://www.biocatalogue.org/

SeqWiki

http://seqanswers.com/wiki/Special:BrowseData

DataONE

https://www.dataone.org/software_tools_catalog

Bonus article:

http://openresearchsoftware.metajnl.com/article/10.5334/jors.bv/

Membrane

http://www.service-repository.com/

BioSharing

https://biosharing.org/

Scientific Filesystem (SCIF) Apps

https://github.com/sci-f/apps

Note: Singularity containers have built-in support for SCIF apps

Explanatory blog posts: