DESCRIPTION

Package: snpReportR
Title: Provides automated HTML and PDF reports of genetic variants detected by RNA-seq
Version: 0.0.0.9
Authors@R: 
    c(person(given = "Jenny",
           family = "Smith",
           role = c("aut", "cre"),
           email = "jennyl.smith12@gmail.com",
           comment = c(ORCID = "0000-0003-0402-2779")), 
      person(given = "Brandon",
           family = "Blobner",
           role = c("aut"),
           email = ""),
      person(given = "Ahmad",
           family = "Al Khleifat",
           role = c("aut"),
           email = ""))
Description: Used input from the Trinity Cancer Transcriptome Analysis Toolkit (CTAT) mutation pipeline to create an interactive HTML report, and static PDF report of the most relevant genetic variants detected. Provides a clinician/reseacher report a patient report. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
URL: https://github.com/collaborativebioinformatics/expressed-variant-reporting
BugReports: https://github.com/collaborativebioinformatics/expressed-variant-reporting
Imports: 
    tibble,
    dplyr,
    InterMineR,
    magrittr,
    stringr,
    Biostrings,
    IRanges,
    Rsamtools,
    GenomicRanges,
    S4Vectors,
    tidyr,
    here,
    ggplot2,
    ggrepel,
    SummarizedExperiment,
    GenomeInfoDb,
    AnnotationDbi,
    Gviz,
    VariantAnnotation,
    rtracklayer,
    htmltools,
    usethis,
    fs,
    gmailr,
    rmarkdown,
    tidytext,
    plotly
Depends: 
    R (>= 2.10)