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collaborativebioinformatics

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  1. STRdust STRdust Public

    Python 13 3

  2. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  3. GeneVar GeneVar Public

    Jupyter Notebook 12 3

  4. nibSV nibSV Public

    Nim 9 4

  5. Disease_subsetting Disease_subsetting Public

    Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis

    Jupyter Notebook 9 2

  6. GeneVar2 GeneVar2 Public

    R 8 7

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Showing 10 of 89 repositories
  • Haploblock_Clusters Public
    collaborativebioinformatics/Haploblock_Clusters’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Oct 27, 2024
  • biobank_scale_tools Public
    collaborativebioinformatics/biobank_scale_tools’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 26, 2024
  • Mimic Public

    Generates simulated ONT metegenomic samples based off existing microbiome sample abundances

    collaborativebioinformatics/Mimic’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2024
  • AMRdiscover Public
    collaborativebioinformatics/AMRdiscover’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Sep 2, 2024
  • starfishDiscovery Public
    collaborativebioinformatics/starfishDiscovery’s past year of commit activity
    R 1 MIT 3 0 1 Updated Aug 30, 2024
  • MoVana Public
    collaborativebioinformatics/MoVana’s past year of commit activity
    WDL 0 MIT 0 0 0 Updated Aug 30, 2024
  • SVeedy Public
    collaborativebioinformatics/SVeedy’s past year of commit activity
    R 2 MIT 4 0 0 Updated Aug 30, 2024
  • SpikeVarTykeVar Public
    collaborativebioinformatics/SpikeVarTykeVar’s past year of commit activity
    Python 8 MIT 5 0 0 Updated Aug 30, 2024
  • tandemrepeats Public

    Tandem Repeats Team -- 2024 SVCC Hackathon

    collaborativebioinformatics/tandemrepeats’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 30, 2024
  • LLM_SVs Public
    collaborativebioinformatics/LLM_SVs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 29, 2024
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