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@cobilab

Computational Biology Laboratory

A laboratory of the Information Systems and Processing (ISP) group at the University of Aveiro

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  1. cryfa cryfa Public

    A secure encryption tool for genomic data

    C++ 56 14

  2. falcon falcon Public

    A tool to infer metagenomic sample composition

    C 21 7

  3. geco3 geco3 Public

    An efficient DNA sequence compressor using Neural Networks

    C 12 8

  4. alcor alcor Public

    Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

    C 10 1

  5. gto gto Public

    A genomics-proteomics toolkit

    C 46 12

  6. jarvis3 jarvis3 Public

    Efficient compression of biological data

    C 3

Repositories

Showing 10 of 33 repositories
  • CompressSequences Public

    How compressible are sequences?

    cobilab/CompressSequences’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • OptimJV3 Public

    Optimize compression parameters of Jarvis3

    cobilab/OptimJV3’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • jarvis3 Public

    Efficient compression of biological data

    cobilab/jarvis3’s past year of commit activity
    C 3 GPL-3.0 0 0 0 Updated Oct 28, 2024
  • ac2 Public

    An efficient amino acid sequence compressor using Neural Networks

    cobilab/ac2’s past year of commit activity
    C 6 GPL-3.0 3 0 0 Updated Oct 21, 2024
  • altair Public

    AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

    cobilab/altair’s past year of commit activity
    C 4 GPL-3.0 0 0 0 Updated Sep 2, 2024
  • alcor Public

    Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

    cobilab/alcor’s past year of commit activity
    C 10 GPL-3.0 1 0 0 Updated Jul 9, 2024
  • HumanGenome Public

    How compressible is a human genome sequence?

    cobilab/HumanGenome’s past year of commit activity
    Shell 5 GPL-3.0 1 0 0 Updated May 15, 2024
  • spark Public

    This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.

    cobilab/spark’s past year of commit activity
    C 1 GPL-3.0 1 0 0 Updated May 2, 2024
  • cryfa Public

    A secure encryption tool for genomic data

    cobilab/cryfa’s past year of commit activity
    C++ 56 GPL-3.0 14 0 0 Updated Apr 14, 2024
  • geco2 Public

    An improved compression tool for DNA sequences

    cobilab/geco2’s past year of commit activity
    C 9 GPL-3.0 2 0 0 Updated Mar 22, 2024
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