Fix directory flags for trace command.

[jmhobbs]

The trace command was not putting the flag values where they belong, leading to a lot of confusion when tracing projects in sub-directories. The main Chromatic command works as intended. H/T @codykaup for finding this.

📦 Published PR as canary version: 11.25.3--canary.1148.13066235606.0

✨ Test out this PR locally via:

npm install chromatic@11.25.3--canary.1148.13066235606.0
# or 
yarn add chromatic@11.25.3--canary.1148.13066235606.0

[github-actions]

📦 Package Size: 5448 KB

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 4 lines in your changes missing coverage. Please review.

Project coverage is 70.00%. Comparing base (9047fb7) to head (0223abc).
Report is 4 commits behind head on main.

Files with missing lines	Patch %	Lines
bin-src/trace.ts	0.00%	4 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1148      +/-   ##
==========================================
- Coverage   70.04%   70.00%   -0.04%     
==========================================
  Files         202      202              
  Lines        7354     7358       +4     
  Branches     1301     1303       +2     
==========================================
  Hits         5151     5151              
- Misses       2180     2184       +4     
  Partials       23       23              

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