Deploying to gh-pages from @ 861444a 🚀

_sources/articles.rst.txt

@@ -9,4 +9,12 @@ What's new?
     :maxdepth: 1
 
     articles/2023/*
+
+2024
+----------
+
+.. toctree::
+    :glob:
+    :maxdepth: 1
+
     articles/2024/*

articles.html

@@ -147,6 +147,9 @@
 <li class="toctree-l3"><a class="reference internal" href="articles/2023/20230808-r_api_release.html">R package <code class="docutils literal notranslate"><span class="pre">cellxgene.census</span></code> V1 is out!</a></li>
 <li class="toctree-l3"><a class="reference internal" href="articles/2023/20230919-out_of_core_methods.html">Memory-efficient implementations of commonly used single-cell methods</a></li>
 <li class="toctree-l3"><a class="reference internal" href="articles/2023/20231012-normalized_layer_precalc_stats.html">Introducing a normalized layer and pre-calculated cell and gene statistics in Census</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#id2">2024</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="articles/2024/20240404-categoricals.html">Census supports categoricals for cell metadata</a></li>
 </ul>
 </li>
@@ -205,6 +208,13 @@ <h2>2023<a class="headerlink" href="#id1" title="Permalink to this heading">¶</
 <li class="toctree-l1"><a class="reference internal" href="articles/2023/20230808-r_api_release.html">R package <code class="docutils literal notranslate"><span class="pre">cellxgene.census</span></code> V1 is out!</a></li>
 <li class="toctree-l1"><a class="reference internal" href="articles/2023/20230919-out_of_core_methods.html">Memory-efficient implementations of commonly used single-cell methods</a></li>
 <li class="toctree-l1"><a class="reference internal" href="articles/2023/20231012-normalized_layer_precalc_stats.html">Introducing a normalized layer and pre-calculated cell and gene statistics in Census</a></li>
+</ul>
+</div>
+</section>
+<section id="id2">
+<h2>2024<a class="headerlink" href="#id2" title="Permalink to this heading">¶</a></h2>
+<div class="toctree-wrapper compound">
+<ul>
 <li class="toctree-l1"><a class="reference internal" href="articles/2024/20240404-categoricals.html">Census supports categoricals for cell metadata</a></li>
 </ul>
 </div>

articles/2023/20230808-r_api_release.html

@@ -152,9 +152,9 @@
 </li>
 <li class="toctree-l3"><a class="reference internal" href="20230919-out_of_core_methods.html">Memory-efficient implementations of commonly used single-cell methods</a></li>
 <li class="toctree-l3"><a class="reference internal" href="20231012-normalized_layer_precalc_stats.html">Introducing a normalized layer and pre-calculated cell and gene statistics in Census</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../2024/20240404-categoricals.html">Census supports categoricals for cell metadata</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="../../articles.html#id2">2024</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../../cellxgene_census_aws_open_data.html">Census in AWS ☁️</a></li>

articles/2023/20230919-out_of_core_methods.html

@@ -151,9 +151,9 @@
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="20231012-normalized_layer_precalc_stats.html">Introducing a normalized layer and pre-calculated cell and gene statistics in Census</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../2024/20240404-categoricals.html">Census supports categoricals for cell metadata</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="../../articles.html#id2">2024</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../../cellxgene_census_aws_open_data.html">Census in AWS ☁️</a></li>

articles/2023/20231012-normalized_layer_precalc_stats.html

@@ -152,9 +152,9 @@
 <li class="toctree-l4"><a class="reference internal" href="#help-us-improve-these-data-additions">Help us improve these data additions</a></li>
 </ul>
 </li>
-<li class="toctree-l3"><a class="reference internal" href="../2024/20240404-categoricals.html">Census supports categoricals for cell metadata</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="../../articles.html#id2">2024</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../../cellxgene_census_aws_open_data.html">Census in AWS ☁️</a></li>

articles/2024/20240404-categoricals.html

@@ -143,10 +143,8 @@
 <li class="toctree-l1"><a class="reference internal" href="../../cellxgene_census_docsite_installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../cellxgene_census_docsite_quick_start.html">Quick start</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../../articles.html">What’s new?</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../../articles.html#id1">2023</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="../2023/20230808-r_api_release.html">R package <code class="docutils literal notranslate"><span class="pre">cellxgene.census</span></code> V1 is out!</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../2023/20230919-out_of_core_methods.html">Memory-efficient implementations of commonly used single-cell methods</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../2023/20231012-normalized_layer_precalc_stats.html">Introducing a normalized layer and pre-calculated cell and gene statistics in Census</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../articles.html#id1">2023</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../../articles.html#id2">2024</a><ul class="current">
 <li class="toctree-l3 current"><a class="current reference internal" href="#">Census supports categoricals for cell metadata</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="#potential-breaking-changes">Potential breaking changes</a></li>
 <li class="toctree-l4"><a class="reference internal" href="#identifying-the-obs-columns-encoded-as-categorical">Identifying the <code class="docutils literal notranslate"><span class="pre">obs</span></code> columns encoded as categorical</a></li>

notebooks/experimental/pytorch.ipynb

@@ -118,7 +118,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "ae75cc69",
+   "id": "a99f825d",
    "metadata": {
     "collapsed": false
    },
@@ -130,7 +130,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "3e7b33fd",
+   "id": "1268d196",
    "metadata": {
     "collapsed": false
    },

r/pkgdown.yml

@@ -12,5 +12,5 @@ articles:
   comp_bio_data_integration: comp_bio_data_integration.html
   comp_bio_normalizing_full_gene_sequencing: comp_bio_normalizing_full_gene_sequencing.html
   comp_bio_summarize_axis_query: comp_bio_summarize_axis_query.html
-last_built: 2024-04-05T16:56Z
+last_built: 2024-04-05T19:56Z