v0.8.2

Version 0.8.2

• Add check for existing, completed EDS files with same name, and option to Experiment.run to overwrite completed or working files.
• Fix XML protocol parsing bug for increment units with non-qslib EDS files.
• Fix stage lines in plots.
• Improve error messages.

v0.8.1

See tag notes.

v0.8.0

• Ensure that protocols don't have incorrect stage index and label information when being sent to machine.
• MachineStatus now includes temperature information, as does the qslib machine-status CLI command.
• Experiment.sync_from_machine can exclude tiffs, and has better logging.
• Custom steps are now approximated in xml files, keeping them somewhat compatible with the machine's android interface.
• Several testing and documentation improvements.
• Python 3.11 fixes.

v0.7.1

• QSLib-initiated experiments should now be partially compatible with the machine's android interface. Status, time, and the (possibly approximate) protocol should be displayed. Data and samples will likely not. Pause/resume/stop/open/close buttons on the interface should function properly.
• Processor and plotting improvements.

v0.7.0

• Protocol now has Protocol.stage, and Stage now has Stage.step, to provide convenient, 1-indexed access,
  such that protocol.stage[5] of is stage 5 of protocol, not stage 6.
• Protocol now supports setting PRERUN and POSTRUN stages, as a series of SCPI commands. This allows
  the setting of things like idling temperatures and exposure times. It is not easily usable yet, however.
• Experiment.change_protocol_from_now allows convenient changes to a currently-running experiment.
• Normalization has been renamed to Processor. Plotting functions can take sequences of processors to
  process data. These now include:
  • Normalization as before: NormByMeanPerWell, NormByMaxPerWell
  • SubtractMeanPerWell: subtracts the mean of a particular region, applied to each well.
  • SmoothEMWMean: smooths data using Pandas' ExponentialMovingWindow.mean.
  • SmoothWindowMean: smooths data using Pandas' Rolling.mean or Window.mean.
• Some initial implementation changes to allow repeated steps (not stages).
• Fixes bug that prevented loading of some aborted runs.
• Fixes monitor's recording of temperatures.
• Experiment.all_filters uses data if it exists; Experiment.filter_strings as a convenience function alternative.
• SCPICommand parsing improvements.
• Protocol printing improvements.

v0.6.3

Fixes a bug in drawer position checks.

v0.6.2

• Add checks for cover and drawer position after changing positions.

0.6.1

• Prevents problems caused by pyparsing 3.0.7.

0.6.0

• Improved plots, including new Experiment.plot_temperatures.
• Comments in SCPI commands, allowing save/load of default filters in protocols
• Licensing switched to AGPL 3.0, CLA in docs.
• Command comment parsing, also used to store whether steps are using default filters.
• Example notebook
• Working parsing of Exposure commands
• Dependency version fixes

0.5.1

• CustomStep.collect (and subclasses, including Step) is now CustomStep.collects. The collect parameter for
  Step can now be None, which will collect data if the step has a filter setting (ie, if you want to collect the
  default Protocol filters, you need to use collect=True).
• Stage.stepped_ramp and Stage.hold_for are now safer in requiring some keyword arguments, are documented, and
  are more flexible.