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Protocol now has Protocol.stage, and Stage now has Stage.step, to provide convenient, 1-indexed access,
such that protocol.stage[5] of is stage 5 of protocol, not stage 6.
Protocol now supports setting PRERUN and POSTRUN stages, as a series of SCPI commands. This allows
the setting of things like idling temperatures and exposure times. It is not easily usable yet, however.
Experiment.change_protocol_from_now allows convenient changes to a currently-running experiment.
Normalization has been renamed to Processor. Plotting functions can take sequences of processors to
process data. These now include:
Normalization as before: NormByMeanPerWell, NormByMaxPerWell
SubtractMeanPerWell: subtracts the mean of a particular region, applied to each well.
SmoothEMWMean: smooths data using Pandas' ExponentialMovingWindow.mean.
SmoothWindowMean: smooths data using Pandas' Rolling.mean or Window.mean.
Some initial implementation changes to allow repeated steps (not stages).
Fixes bug that prevented loading of some aborted runs.
Fixes monitor's recording of temperatures.
Experiment.all_filters uses data if it exists; Experiment.filter_strings as a convenience function alternative.