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v0.7.0

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@cgevans cgevans released this 09 Mar 22:43
· 104 commits to main since this release
v0.7.0
dc9c35d
  • Protocol now has Protocol.stage, and Stage now has Stage.step, to provide convenient, 1-indexed access,
    such that protocol.stage[5] of is stage 5 of protocol, not stage 6.
  • Protocol now supports setting PRERUN and POSTRUN stages, as a series of SCPI commands. This allows
    the setting of things like idling temperatures and exposure times. It is not easily usable yet, however.
  • Experiment.change_protocol_from_now allows convenient changes to a currently-running experiment.
  • Normalization has been renamed to Processor. Plotting functions can take sequences of processors to
    process data. These now include:
    • Normalization as before: NormByMeanPerWell, NormByMaxPerWell
    • SubtractMeanPerWell: subtracts the mean of a particular region, applied to each well.
    • SmoothEMWMean: smooths data using Pandas' ExponentialMovingWindow.mean.
    • SmoothWindowMean: smooths data using Pandas' Rolling.mean or Window.mean.
  • Some initial implementation changes to allow repeated steps (not stages).
  • Fixes bug that prevented loading of some aborted runs.
  • Fixes monitor's recording of temperatures.
  • Experiment.all_filters uses data if it exists; Experiment.filter_strings as a convenience function alternative.
  • SCPICommand parsing improvements.
  • Protocol printing improvements.