QC script update

scripts/solo_QC.sh

@@ -1,6 +1,6 @@
 #!/bin/bash 
 
-echo -e "Sample\tRd_all\tRd_in_cells\tUMI_in_cells\tCells\tMed_nFeature\tGood_BC\tall_u+m\tall_u\texon_u+m\texon_u\tfull_u+m\tfull_u"
+echo -e "Sample\tRd_all\tRd_in_cells\tFrc_in_cells\tUMI_in_cells\tCells\tMed_nFeature\tGood_BC\tall_u+m\tall_u\texon_u+m\texon_u\tfull_u+m\tfull_u"
 
 for i in *
 do
@@ -16,8 +16,9 @@ do
     F2=`grep "Reads Mapped to GeneFull: Unique GeneFull," $i/output/GeneFull/Summary.csv | awk -F "," '{print $2}'`
     C=`grep "Estimated Number of Cells," $i/output/GeneFull/Summary.csv | awk -F "," '{print $2}'`
     R2=`grep "Unique Reads in Cells Mapped to GeneFull," $i/output/GeneFull/Summary.csv | awk -F "," '{print $2}'`
+    CF=`echo $R1 | awk -v v=$R2 '{printf "%.3f\n",v/$1}'`
     R3=`grep "UMIs in Cells," $i/output/GeneFull/Summary.csv | awk -F "," '{print $2}'`
     GC=`grep "Median GeneFull per Cell," $i/output/GeneFull/Summary.csv | awk -F "," '{print $2}'`
-    echo -e "$i\t$R1\t$R2\t$R3\t$C\t$GC\t$B\t$G1\t$G2\t$T1\t$T2\t$F1\t$F2"
+    echo -e "$i\t$R1\t$R2\t$CF\t$R3\t$C\t$GC\t$B\t$G1\t$G2\t$T1\t$T2\t$F1\t$F2"
   fi
 done