Added the pyphotometry preprocessing steps. There is a function calle… #14
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| name: Test building package and publish | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - maint/* | |
| tags: | |
| - "*" | |
| pull_request: | |
| branches: | |
| - main | |
| - maint/* | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3 | |
| - run: pip install --upgrade build twine | |
| - name: Build sdist and wheel | |
| run: python -m build | |
| - run: twine check dist/* | |
| - name: Upload sdist and wheel artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - name: Build git archive | |
| run: mkdir archive && git archive -v -o archive/archive.tgz HEAD | |
| - name: Upload git archive artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: archive | |
| path: archive/ | |
| test-package: | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| strategy: | |
| matrix: | |
| package: ['wheel', 'sdist', 'archive', 'editable'] | |
| steps: | |
| - name: Download sdist and wheel artifacts | |
| if: matrix.package != 'archive' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - name: Download git archive artifact | |
| if: matrix.package == 'archive' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: archive | |
| path: archive/ | |
| - name: Checkout repo | |
| if: matrix.package == 'editable' | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Update pip | |
| run: pip install --upgrade pip | |
| - name: Install wheel | |
| if: matrix.package == 'wheel' | |
| run: pip install dist/*.whl | |
| - name: Install sdist | |
| if: matrix.package == 'sdist' | |
| run: pip install dist/*.tar.gz | |
| - name: Install archive | |
| if: matrix.package == 'archive' | |
| run: pip install archive/archive.tgz | |
| - name: Install editable | |
| if: matrix.package == 'editable' | |
| run: pip install -e . | |
| - name: Install test extras | |
| run: pip install .[test] | |
| - name: Download test data | |
| env: | |
| BOX_USERNAME: ${{ secrets.BOX_USERNAME }} | |
| BOX_PASSWORD: ${{ secrets.BOX_PASSWORD }} | |
| run: | | |
| python tests/download_test_data.py | |
| tree tests/test_data | |
| - name: Run tests without coverage | |
| if: matrix.package != 'editable' | |
| run: pytest -v jdb_to_nwb | |
| - name: Run tests on editable install with coverage | |
| if: matrix.package == 'editable' | |
| run: pytest --cov=src --cov-report=xml -v jdb_to_nwb | |
| - name: Upload coverage reports to Codecov | |
| if: matrix.package == 'editable' | |
| uses: codecov/codecov-action@v5 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| # pypi-publish: | |
| # name: Upload release to PyPI | |
| # runs-on: ubuntu-latest | |
| # needs: [test-package] | |
| # environment: | |
| # name: pypi | |
| # url: https://pypi.org/p/jdb-to-nwb | |
| # permissions: | |
| # id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
| # if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
| # steps: | |
| # - uses: actions/download-artifact@v4 | |
| # with: | |
| # name: dist | |
| # path: dist/ | |
| # - name: Publish package distributions to PyPI | |
| # uses: pypa/gh-action-pypi-publish@release/v1 |