Stelloo et al. - Integrative epigenetic taxonomy of primary prostate cancer

[SRodenburg]

https://www.nature.com/articles/s41467-018-07270-2

Epigenetic study (n=100), includes ChIP-Seq and RNA-Seq. Clinical data needs to be requested at the authors.

• create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• Document the curation process, e.g. how and by whom the data was transformed
• Follow the data checklist
• Create a pull request to datahub once the data is curated
• Push to triage portal
• Import into msk and public portal database
• Update the default quick select study list see options for selecting tcga + non-tcga studies cbioportal#5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
• Update cBioPortal news

[sbabyanusha]

Missing Data:

• Clinical Data
• RNA-Seq
• Mutations
• SV
• CNA