tests: Updated to use Pathlib to access assets. #39
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit tests | |
| on: | |
| push: | |
| branches: ['**'] | |
| pull_request: | |
| branches: ['**'] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.8, 3.9] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| fetch-depth: 2 | |
| - name: Install ubuntu dependencies | |
| shell: bash -el {0} | |
| run: | | |
| if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get install libopenmpi-dev openmpi-bin | |
| fi; | |
| - name: Install dependencies | |
| shell: bash -el {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| conda install --yes -c conda-forge mpi4py openmpi | |
| - name: Install HNN-core | |
| shell: bash -el {0} | |
| run: | | |
| pip install --verbose '.[opt, parallel, test, gui]' | |
| - name: Lint with flake8 | |
| shell: bash -el {0} | |
| run: | | |
| flake8 --count hnn_core | |
| - name: Test with pytest | |
| shell: bash -el {0} | |
| run: | | |
| python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| shell: bash -el {0} | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) -f ./coverage.xml |