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ci: update checkout to version 4 #1

ci: update checkout to version 4

ci: update checkout to version 4 #1

Workflow file for this run

name: Unit tests
on:
push:
branches: ['**']
pull_request:
branches: ['**']
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
python-version: [3.8, 3.9]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test
python-version: ${{ matrix.python-version }}
- name: Install ubuntu dependencies
shell: bash -el {0}
run: |
if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install libopenmpi-dev openmpi-bin
fi;
- name: Install dependencies
shell: bash -el {0}
run: |
python -m pip install --upgrade pip
conda install --yes -c conda-forge mpi4py openmpi
- name: Install HNN-core
shell: bash -el {0}
run: |
pip install --verbose '.[opt, parallel, test, gui]'
- name: Lint with flake8
shell: bash -el {0}
run: |
flake8 --count hnn_core
- name: Test with pytest
shell: bash -el {0}
run: |
python -m pytest . --cov=hnn_core hnn_core/tests/ --cov-report=xml
- name: Upload code coverage
shell: bash -el {0}
run: |
bash <(curl -s https://codecov.io/bash) -f ./coverage.xml