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assemble_refbased tweaks#83

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dpark01 merged 5 commits intomasterbroadinstitute/viral-pipelines:masterfrom dp-ivarbroadinstitute/viral-pipelines:dp-ivarCopy head branch name to clipboardMay 23, 2020

+20-11

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Commits on May 22, 2020

• bump ivar docker image

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  d2c22ad

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• increase assemble_refbased default min_coverage from 2 to 3, add parameter_meta description of optionals for task

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  71f137e

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• update README info on viral-ngs-staging

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  1726393

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• change assemble_refbased final coverage stat to come from align_to_ref instead of align_to_self

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Commits on May 23, 2020

• update expected outputs now that min_coverage is higher, bases covered is lower

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  4360ca6

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