Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

demux_deplete small updates #552

Merged
merged 10 commits into from
Aug 22, 2024
Merged

demux_deplete small updates #552

merged 10 commits into from
Aug 22, 2024

Commits on Aug 21, 2024

  1. fix newline outputs of csv.DictWriter invocations

    @dpark01
    dpark01 committed Aug 21, 2024
    Configuration menu
    Copy the full SHA
    49e9597 View commit details
    Browse the repository at this point in the history

Commits on Aug 22, 2024

  1. Merge branch 'dp-demux' of https://github.com/broadinstitute/viral-pi… 

    …pelines into dp-demux
    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    9fafa02 View commit details
    Browse the repository at this point in the history

  2. add flowcell id to libraries table

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    b92e613 View commit details
    Browse the repository at this point in the history

  3. make sure to error if python code errors

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    ecfe7e7 View commit details
    Browse the repository at this point in the history

  4. oops, parameterize hardcoded library table name

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    362eb70 View commit details
    Browse the repository at this point in the history

  5. emit workflow level output files

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    2407c47 View commit details
    Browse the repository at this point in the history

  6. add read counts to library table

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    d9f0d38 View commit details
    Browse the repository at this point in the history

  7. fix parsing of wdl Pair objects are serialized

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    df04d03 View commit details
    Browse the repository at this point in the history

  8. current dxWDL doesnt like write_json, skip demux_deplete for dxWDL

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    842b59a View commit details
    Browse the repository at this point in the history

  9. need to skip dnax build on uber-workflow that uses demux_deplete

    @dpark01
    dpark01 committed Aug 22, 2024
    Configuration menu
    Copy the full SHA
    22aa08c View commit details
    Browse the repository at this point in the history