classify_single: parameterize taxa to deplete #536
Merged
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The modern WDL spec has clarified that the end user can never override assignments to task inputs made in workflow code. This means that
classify_single
's two invocations of themetagenomics.filter_bam_to_taxa
task (with different default input values for each call) has inputs that are not user-editable as we intended. The only workaround appears to be to promote these task inputs to boilerplate workflow inputs that have default values (and are overridable by the end user).