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denovo assembly SPAdes updates #441

Merged
merged 6 commits into from
Dec 2, 2022
Merged

denovo assembly SPAdes updates #441

merged 6 commits into from
Dec 2, 2022

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dpark01
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@dpark01 dpark01 commented Dec 1, 2022

Update SPAdes version. Change default to rnaviralspades (from rnaspades). Expose more optional parameters for SPAdes in assemble_denovo. Allow for override of default rnaviralspades to other modes (metaspades, metaviralspades).

@dpark01 dpark01 marked this pull request as ready for review December 1, 2022 21:28
@dpark01 dpark01 changed the title denovo assembly options denovo assembly SPAdes updates Dec 2, 2022
@dpark01 dpark01 merged commit fb1ad41 into master Dec 2, 2022
@dpark01 dpark01 deleted the dp-denovo branch December 2, 2022 13:55
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