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Add workflow for QIIME2 classification of 16S reads #439

Merged
merged 90 commits into from
Dec 21, 2022
Merged

Add workflow for QIIME2 classification of 16S reads #439

merged 90 commits into from
Dec 21, 2022

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golu099
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@golu099 golu099 commented Nov 15, 2022

Adding the QIIME workflow to terra.

golu099 and others added 29 commits September 15, 2022 14:41
@dpark01 dpark01 changed the title Add_QIIME_WDL.md Add workflow for QIIME2 classification of 16S reads Dec 1, 2022
dpark01
dpark01 requested changes Dec 19, 2022
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why does WDL/tasks/tasks_qiime_import_bam.wdl exist? Can the new workflow just import the already existing task from tasks_16S_amplicon.wdl instead of this duplicate copy?

dpark01
dpark01 approved these changes Dec 21, 2022
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Once this is tested/working in Terra, this looks good to go!

@golu099 golu099 merged commit 9605025 into master Dec 21, 2022
@golu099 golu099 deleted the fnegrete_test branch December 21, 2022 18:33
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@dpark01 dpark01 dpark01 approved these changes

@tomkinsc tomkinsc tomkinsc left review comments

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@golu099 @tomkinsc @dpark01