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nextstrain wdl updates #121

Merged
merged 9 commits into from
Jun 18, 2020
Merged

nextstrain wdl updates #121

merged 9 commits into from
Jun 18, 2020

Commits on Jun 12, 2020

  1. change cpu load avg to float, figure out output filenames more automa… 

    …tically
    @dpark01
    dpark01 committed Jun 12, 2020
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  2. more cpu for refine and ancestral tree

    @dpark01
    dpark01 committed Jun 12, 2020
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  3. report full cpu load string

    @dpark01
    dpark01 committed Jun 12, 2020
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Commits on Jun 13, 2020

  1. more vm reshaping

    @dpark01
    dpark01 committed Jun 13, 2020
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  2. increase ancestral_traits for profiling

    @dpark01
    dpark01 committed Jun 13, 2020
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Commits on Jun 15, 2020

  1. fix snp-sites call to make compliant vcf, rename build_augur_tree to … 

    …augur_from_assemblies
    @dpark01
    dpark01 committed Jun 15, 2020
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  2. rename beast_to_auspice to augur_from_beast_mcc

    @dpark01
    dpark01 committed Jun 15, 2020
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  3. fix ram output int for task augur_import_beast; add set -e (and somet… 

    …imes -o pipefail) to all nextstrain command blocks
    @dpark01
    dpark01 committed Jun 15, 2020
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Commits on Jun 16, 2020

  1. more reshaping

    @dpark01
    dpark01 committed Jun 16, 2020
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