v2.3.6.0

What's Changed

• python open() now defaults to universal newlines; update mode'rU' -> 'r' by @tomkinsc in #54
• migration from Travis CI to GitHub Actions by @tomkinsc in #51
• update build and dependencies by @dpark01 in #57

Full Changelog: v2.1.20.2...v2.3.6.0

v2.1.20.2

Bugfix ncbi.prep_genbank_files further when handling sample names with non-filename-friendly characters

v2.1.20.1

Add bugfixes for ncbi.tbl_transfer_multichr when fasta headers contain filename-unfriendly characters

v2.1.20.0

Update viral-core to 2.1.20 (picard, samtools, pysam, zstandard)

v2.1.19.1

Bug fix to note column for ncbi.biosample_to_genbank [#41]

v2.1.19.0

• bump viral-core from 2.1.16 to 2.1.19 [#40]
• modifications to ncbi.biosample_to_genbank to add genbank source notes based on biosample purpose of sequencing/sampling fields [#40]

v2.1.16.0

• bump viral-core to 2.1.16

v2.1.13.2

• add option to emit genbank source modifier table with ISO-formatted dates for the collection date (previously, this was not allowed by genbank, but is now required for SARS-CoV-2 and permitted for all taxa) [#36]

v2.1.13.1

Bugfix release [#35]

v2.1.13.0

• bump viral-core to 2.1.13
• updates to ncbi.py scripts to prep genbank submissions via ftp and web portals [#34]