Merge pull request #34 from broadinstitute/dp-sort-empty

bugfix minimap2_idxstats
broadinstitute · Jun 22, 2020 · 424a116 · 424a116
2 parents a1a93d7 + e6fae9c
commit 424a116
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/read_utils.py b/read_utils.py
@@ -1323,7 +1323,6 @@ def minimap2_idxstats(inBam, refFasta, outBam=None, outStats=None):
 
     ref_indexed = util.file.mkstempfname('.reference.fasta')
     shutil.copyfile(refFasta, ref_indexed)
-    mm2.index(ref_indexed)
 
     mm2.align_bam(inBam, ref_indexed, bam_aligned)