Releases: broadinstitute/viral-baseimage
Releases · broadinstitute/viral-baseimage
0.2.3
- update qsv 0.123.0 -> 0.125.0 #28
- include qsvpy rather than qsvlite (~14MB -> ~70MB) #28
0.2.1
- add
qsv
to the binaries available in the image (PR #26)
0.2.0
- update baseimage from Ubuntu 18.04 LTS (bionic) to Ubuntu 22.04 LTS (jammy)
- gcp package installed is now
google-cloud-cli
(new name for google-cloud-sdk
)
xz-utils
added for lzma/xz compressed files
- explicitly set
TZ
environment variable to UTC
(which is the assumption already) in order to reduce the number of C system calls asking for the timezone (see here)
- bump
miniwdl
1.4.1 -> 1.8.0
- bump
dx-toolkit
0.291.1 -> 0.325.1
- bump dx upload agent 1.5.31 -> 1.5.33
- bump miniconda version 4.7.12.1 -> py310_23.1.0-1
- bump
udocker
1.3.1 -> 1.3.7
0.1.19
- bump
dxtoolkit
0.288.0 -> 0.291.1 #18
- add GNU
parallel
to packages installed in base image #21
0.1.18
- bump
ubuntu:bionic-20191029
-> ubuntu:bionic-20200921
- bump miniconda
4.6.14
-> 4.7.12.1
- include mamba, CLI-compatible conda package manager with faster dependency solver
0.1.17
- Update FROM bionic-20190807 to bionic-20191029
- update to dx-toolkit 0.288.0
0.1.16
- update FROM bionic-20180821 to bionic-20190807
- add zip/unzip apt packages to install
- drop gosu (we never used this, and probably better to try singularity/rootless docker instead)
0.1.15
- pin conda version to 4.6.14 (for now)
- update dx toolkit and dx upload agent versions and source URLs
- gosu 1.10 -> 1.11
- set exit on failure (including pipe failure) in install shell scripts
- increase precedence of conda-forge channel