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Releases: broadinstitute/viral-baseimage

0.2.3

12 Apr 18:41
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  • update qsv 0.123.0 -> 0.125.0 #28
  • include qsvpy rather than qsvlite (~14MB -> ~70MB) #28

0.2.2

12 Mar 14:02
1fc31b5
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0.2.1

08 Mar 22:21
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  • add qsv to the binaries available in the image (PR #26)

0.2.0

22 Feb 02:04
13c4e3c
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  • update baseimage from Ubuntu 18.04 LTS (bionic) to Ubuntu 22.04 LTS (jammy)
  • gcp package installed is now google-cloud-cli (new name for google-cloud-sdk)
  • xz-utils added for lzma/xz compressed files
  • explicitly set TZ environment variable to UTC (which is the assumption already) in order to reduce the number of C system calls asking for the timezone (see here)
  • bump miniwdl 1.4.1 -> 1.8.0
  • bump dx-toolkit 0.291.1 -> 0.325.1
  • bump dx upload agent 1.5.31 -> 1.5.33
  • bump miniconda version 4.7.12.1 -> py310_23.1.0-1
  • bump udocker 1.3.1 -> 1.3.7

0.1.20

14 Jan 02:28
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  • include file (command)

0.1.19

14 Dec 19:33
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  • bump dxtoolkit 0.288.0 -> 0.291.1 #18
  • add GNU parallel to packages installed in base image #21

0.1.18

13 Nov 04:04
51bb04f
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  • bump ubuntu:bionic-20191029 -> ubuntu:bionic-20200921
  • bump miniconda 4.6.14 -> 4.7.12.1
  • include mamba, CLI-compatible conda package manager with faster dependency solver

0.1.17

05 Nov 04:27
d549cca
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  • Update FROM bionic-20190807 to bionic-20191029
  • update to dx-toolkit 0.288.0

0.1.16

13 Sep 00:58
7e2e8c3
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  • update FROM bionic-20180821 to bionic-20190807
  • add zip/unzip apt packages to install
  • drop gosu (we never used this, and probably better to try singularity/rootless docker instead)

0.1.15

12 Jul 21:03
33b6d1a
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  • pin conda version to 4.6.14 (for now)
  • update dx toolkit and dx upload agent versions and source URLs
  • gosu 1.10 -> 1.11
  • set exit on failure (including pipe failure) in install shell scripts
  • increase precedence of conda-forge channel