Stop removing periods from the end of output names (#1433)

* Stop removing periods from the end of output names * Update CheckFingerprint
broadinstitute · Nov 15, 2022 · 5295289 · 5295289
1 parent 4f7bb95
commit 5295289
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/src/main/java/picard/analysis/CollectMultipleMetrics.java b/src/main/java/picard/analysis/CollectMultipleMetrics.java
@@ -688,9 +688,6 @@ public void setProgramsToRun(final Collection<ProgramInterface> programsToRun) {
 
     @Override
     public int doWork() {
-        if (OUTPUT.endsWith(".")) {
-            OUTPUT = OUTPUT.substring(0, OUTPUT.length() - 1);
-        }
 
         final Map<ProgramInterface, List<String>> additionalArguments = processAdditionalArguments(EXTRA_ARGUMENT);
 

diff --git a/src/main/java/picard/fingerprint/CheckFingerprint.java b/src/main/java/picard/fingerprint/CheckFingerprint.java
@@ -216,8 +216,8 @@ public class CheckFingerprint extends CommandLineProgram {
 
     private final Log log = Log.getInstance(CheckFingerprint.class);
 
-    public static final String FINGERPRINT_SUMMARY_FILE_SUFFIX = "fingerprinting_summary_metrics";
-    public static final String FINGERPRINT_DETAIL_FILE_SUFFIX = "fingerprinting_detail_metrics";
+    public static final String FINGERPRINT_SUMMARY_FILE_SUFFIX = ".fingerprinting_summary_metrics";
+    public static final String FINGERPRINT_DETAIL_FILE_SUFFIX = ".fingerprinting_detail_metrics";
 
     private Path inputPath;
     private Path genotypesPath;
@@ -229,7 +229,6 @@ protected int doWork() {
             outputDetailMetricsFile = DETAIL_OUTPUT;
             outputSummaryMetricsFile = SUMMARY_OUTPUT;
         } else {
-            OUTPUT += ".";
             outputDetailMetricsFile = new File(OUTPUT + FINGERPRINT_DETAIL_FILE_SUFFIX);
             outputSummaryMetricsFile = new File(OUTPUT + FINGERPRINT_SUMMARY_FILE_SUFFIX);
         }