redeploy (#568)

broadinstitute · May 24, 2024 · bb11e1c · bb11e1c
1 parent 308faa3
commit bb11e1c
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Showing 2 changed files with 6 additions and 13 deletions.
diff --git a/notebooks/ML4H_Model_Factory_Intro.ipynb b/notebooks/ML4H_Model_Factory_Intro.ipynb
@@ -29,25 +29,18 @@
     "import sys\n",
     "import pickle\n",
     "import gzip\n",
-    "from typing import List, Dict, Callable\n",
-    "from collections import defaultdict, Counter\n",
+    "from typing import Dict\n",
     "\n",
     "import h5py\n",
     "import numpy as np\n",
     "\n",
     "\n",
-    "from ml4h.defines import StorageType\n",
     "from ml4h.arguments import parse_args\n",
     "from ml4h.TensorMap import TensorMap, Interpretation\n",
     "from ml4h.tensor_generators import test_train_valid_tensor_generators\n",
-    "from ml4h.models.train import train_model_from_generators\n",
-    "from ml4h.models.model_factory import make_multimodal_multitask_model\n",
-    "from ml4h.models.inspect import plot_and_time_model\n",
     "from ml4h.recipes import compare_multimodal_scalar_task_models, train_multimodal_multitask\n",
     "\n",
-    "%matplotlib inline\n",
-    "import matplotlib.pyplot as plt\n",
-    "from matplotlib import gridspec"
+    "%matplotlib inline"
    ]
   },
   {
@@ -203,7 +196,7 @@
     "sys.argv = ['train', \n",
     "            '--tensors', HD5_FOLDER, \n",
     "            '--input_tensors', 'mnist.mnist_image',\n",
-    "            '--output_tensors', 'mnit.mnist_label',\n",
+    "            '--output_tensors', 'mnist.mnist_label',\n",
     "            '--batch_size', '16',\n",
     "            '--epochs', '12',\n",
     "            '--output_folder', OUTPUT_FOLDER,\n",
@@ -215,7 +208,7 @@
     "sys.argv = ['train',\n",
     "            '--tensors', HD5_FOLDER,\n",
     "            '--input_tensors', 'mnist.mnist_image',\n",
-    "            '--output_tensors', 'mnit.mnist_label',\n",
+    "            '--output_tensors', 'mnist.mnist_label',\n",
     "            '--activation', 'mish',\n",
     "            '--dense_blocks', '64', '64', '64',\n",
     "            '--batch_size', '16',\n",
@@ -243,7 +236,7 @@
     "sys.argv = ['compare_scalar', \n",
     "            '--tensors', HD5_FOLDER, \n",
     "            '--input_tensors', 'mnist.mnist_image',\n",
-    "            '--output_tensors', 'mnit.mnist_label',\n",
+    "            '--output_tensors', 'mnist.mnist_label',\n",
     "            '--id', 'mnist_model_comparison',\n",
     "            '--output_folder', OUTPUT_FOLDER,\n",
     "            '--model_files', f'{OUTPUT_FOLDER}learn_2d_cnn/learn_2d_cnn.h5',\n",

diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 long_description = (here / 'README.md').read_text(encoding='utf-8')
 setup(
     name='ml4h',
-    version='0.0.12',
+    version='0.0.13',
     description='Machine Learning for Health python package',
     long_description=long_description,  # Optional
     long_description_content_type='text/markdown',